BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3063.p
         (257 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095568|ref|YP_001100643.1| hypothetical protein HEAR2391 [...   361   e-101

>gi|134095568|ref|YP_001100643.1| hypothetical protein HEAR2391
           [Herminiimonas arsenicoxydans]
          Length = 257

 Score =  361 bits (926), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/257 (77%), Positives = 226/257 (87%)

Query: 1   MTVSYVVSGFAVGLLVGLTGVGGGSLMTPLLTLLFGIHPSVAVGTDLAFASATKTAGTLA 60
           M+VSY+VSGFAVGLLVGLTGVGGGSLMTPLLTLLFG+ P+VAVGTDLAFASATK AGT A
Sbjct: 1   MSVSYIVSGFAVGLLVGLTGVGGGSLMTPLLTLLFGVSPTVAVGTDLAFASATKVAGTFA 60

Query: 61  HRFKGTVRWDVVRRLSYGALPAALVTTLLLKHFGAVSEGIALTIRYSIAISVLLTVIALL 120
           HR++G V W +V+ L  GALPAA++TTL LK+FG + + I   IRYSIA SV+LTVIAL+
Sbjct: 61  HRYRGNVHWHIVKHLCLGALPAAVLTTLTLKYFGVLDQEIGQIIRYSIAGSVMLTVIALI 120

Query: 121 FRSRMQAWLNAHPQRQLQGSTLATATIAAGALLGTLVTISSIGAGAVGATLLVLLYPRLS 180
           FR+RMQ W+NAHP RQ+QG  L  ATI +GA+LGTLVTISSIGAGA+GAT+LVLLYPRL+
Sbjct: 121 FRTRMQHWMNAHPGRQIQGEKLVVATIVSGAILGTLVTISSIGAGAIGATILVLLYPRLT 180

Query: 181 PAEIAGTDIAYAVPLTAIAALGHWWLGSINWELLATLLLGSVPGITIGSLAARAVPEKFL 240
           PAEIAGTDIAYAVPLTAIAALGHWWLGSINWELLA LLLGSVPGIT+GSL AR +PEK L
Sbjct: 181 PAEIAGTDIAYAVPLTAIAALGHWWLGSINWELLAMLLLGSVPGITLGSLVARTIPEKVL 240

Query: 241 RGLLAITLTSVAVKLIW 257
           R LLA  LT+VAVKL++
Sbjct: 241 RVLLASVLTTVAVKLVY 257


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 363,742
Number of extensions: 12049
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 257
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 177
Effective length of database: 736,747
Effective search space: 130404219
Effective search space used: 130404219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)