BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3062.p (313 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-... 560 e-161 gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [... 330 7e-92 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 89 2e-19 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 75 4e-15 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 70 1e-13 >gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-like protein [Herminiimonas arsenicoxydans] Length = 313 Score = 560 bits (1443), Expect = e-161, Method: Compositional matrix adjust. Identities = 263/313 (84%), Positives = 295/313 (94%) Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60 MNLHQ RFVREAVRQNFNLTEAAKAL+TSQPGVSKAIIELEEELGVDIF+RHGKRIRGLT Sbjct: 1 MNLHQLRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLT 60 Query: 61 EPGRAVLRSVELIMQEVDGLKRIGKEFAAHDSGSFTIATTHTQARYALPKVVQAFTQKYP 120 EPGRAVL+SVE IM E++GLKRIG EFAAHDSGSFTIATTHTQARY+LPKVVQAFTQK+P Sbjct: 61 EPGRAVLKSVEAIMLEIEGLKRIGNEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKFP 120 Query: 121 KVHLSLLQGNPRQITEMVRNDQADIAIATEALASGEGLVSLPCYQWEHVVVVPPDHPLLQ 180 KV LSLLQGNP+QI EMV DQAD+AIATEA+A+ +GL+SLPCYQWEH +V+P DHPLL+ Sbjct: 121 KVRLSLLQGNPKQIAEMVLMDQADLAIATEAIANMDGLISLPCYQWEHQIVLPLDHPLLK 180 Query: 181 SKSLTLEEIAANPLITYDSAFSGRSKIDHAFSLRHLKPDVVLEAIDADVIKTYVELGMGV 240 SKS+TLEE+AA P+ITYDSAF+GR+KIDHAF+LR+LKPD++LEAIDADVIKTYVELGMG+ Sbjct: 181 SKSITLEELAAYPIITYDSAFAGRNKIDHAFNLRNLKPDILLEAIDADVIKTYVELGMGI 240 Query: 241 GIIAGIAFDAERDRGLRAIPAGHLFGTNVSRVALKQGAYLRGYVYTFIELLAPTLNRKLI 300 GIIAG+AFD ERD+ LRAIPAGHLFGTNVSRVALKQGAYLR YV+TFIELL PTLNRKL+ Sbjct: 241 GIIAGMAFDTERDKNLRAIPAGHLFGTNVSRVALKQGAYLRSYVFTFIELLTPTLNRKLV 300 Query: 301 AQVMEGEKDMYEL 313 QV+ G+KDMYEL Sbjct: 301 EQVLSGDKDMYEL 313 >gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [Herminiimonas arsenicoxydans] Length = 308 Score = 330 bits (845), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 158/305 (51%), Positives = 208/305 (68%) Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60 MN Q R +RE R FNLTE A L+TSQPGVS+ I ELEEELGVDIF R+GKR+ GLT Sbjct: 1 MNFQQLRSIRETARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLT 60 Query: 61 EPGRAVLRSVELIMQEVDGLKRIGKEFAAHDSGSFTIATTHTQARYALPKVVQAFTQKYP 120 +PGR +L ++ ++ E + L+R +E+A + G+ +ATTHTQARY LP+VVQAF ++P Sbjct: 61 DPGRGILTIIDRLLLEAENLQRASQEYAGQEIGTLAVATTHTQARYMLPEVVQAFRAEFP 120 Query: 121 KVHLSLLQGNPRQITEMVRNDQADIAIATEALASGEGLVSLPCYQWEHVVVVPPDHPLLQ 180 KV ++L Q +P I E V + +ADI IATE L+ E LVS PCY+W H +VVP H LL Sbjct: 121 KVRIALQQSSPEHIAEWVLSGKADIGIATEGLSQFEDLVSFPCYRWHHAIVVPQGHALLS 180 Query: 181 SKSLTLEEIAANPLITYDSAFSGRSKIDHAFSLRHLKPDVVLEAIDADVIKTYVELGMGV 240 +TLE +A PLITYD F+GR ID AF + PD+VL A+D+DVI+ YV LG+GV Sbjct: 181 HAPVTLEALAKYPLITYDLGFTGRGHIDDAFKSADIAPDIVLTAMDSDVIQQYVSLGLGV 240 Query: 241 GIIAGIAFDAERDRGLRAIPAGHLFGTNVSRVALKQGAYLRGYVYTFIELLAPTLNRKLI 300 GI+A +A GL I HLF NV+R+A+++GAYLR Y Y+FI+ AP L R I Sbjct: 241 GIVASMAVQHNGSHGLAVIDGSHLFAQNVTRLAVRRGAYLRQYTYSFIQQFAPELTRADI 300 Query: 301 AQVME 305 + ++ Sbjct: 301 DRALK 305 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 105/207 (50%), Gaps = 3/207 (1%) Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60 M L + +++ R+ + AA+A + +QP +S AI +LE+ELGV +F R G I +T Sbjct: 1 MTLTELKYIVAVAREK-HFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEI-SMT 58 Query: 61 EPGRAVLRSVELIMQEVDGLKRIGKEFAAHDSGSFTIATTHTQARYALPKVVQAFTQKYP 120 G ++ E ++++ +K I K+ G F + +T A Y LP +V+A ++ P Sbjct: 59 PLGVQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVP 118 Query: 121 KVHLSLLQGNPRQITEMVRNDQADIAIATEALASGEGLVSLPCYQWEHVVVVPPDHPLLQ 180 ++ L L + ++ E +R + D AI + +GL+ P Y VV VP HP + Sbjct: 119 QMPLVLQENFTVKLLEQLRQGEIDAAIVALPIPD-QGLLVQPVYDEPFVVAVPKHHPWAE 177 Query: 181 SKSLTLEEIAANPLITYDSAFSGRSKI 207 S+T + + + ++ + R ++ Sbjct: 178 RSSVTTDNLKSETMLLLGNGHCFRDQV 204 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 75.1 bits (183), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 3/247 (1%) Query: 9 VREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLTEPGRAVLR 68 V E V + + + AA+ L+ +QP VS + +LE+ G+ +F + GK+I LT G +L Sbjct: 55 VFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIY-LTPGGTELLH 113 Query: 69 SVELIMQEVDGLKRIGKEFAAHDSGSFTIATTHTQARYALPKVVQAFTQKYPKVHLSLLQ 128 I+Q+ + +F G +A + Y P+++ F + + V L+L Sbjct: 114 YSRTIIQQFQEAEDAMTQFKGITGGKLNVAVI-SAGDYFFPRLLVEFARSHQGVTLNLSV 172 Query: 129 GNPRQITEMVRNDQADIAIATEALASGEGLVSLPCYQWEHVVVVPPDHPLLQSKSLTLEE 188 N + + N+ D+AI + ++ P +V+V PDH L+ K++ + Sbjct: 173 HNREGLLNQLANNLTDLAIMVRP-PTDMDTINEPFAPHPYVIVAAPDHHLVSKKNIPMST 231 Query: 189 IAANPLITYDSAFSGRSKIDHAFSLRHLKPDVVLEAIDADVIKTYVELGMGVGIIAGIAF 248 + P + + ++ F R ++ +E + IK V GMG+ ++ Sbjct: 232 LIHEPFVVREKGSDTWHSMEDGFGSRIDDLNIAMEIKSTETIKQAVIAGMGISFLSAHTI 291 Query: 249 DAERDRG 255 E G Sbjct: 292 SMELQAG 298 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 70.5 bits (171), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 7/248 (2%) Query: 1 MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEEELGVDIFTRHGKRIRGLT 60 + L Q R+ V + + AA L+ +QP +S+AI LE LGV +F R + + LT Sbjct: 3 IELRQLRYF-VTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSV-ALT 60 Query: 61 EPGRAVLRSVELIMQEVDGLKRIGKEFAAHDSGSFTIATTHTQARYALPKVVQAFTQKYP 120 G A+L + I+Q+ L + + + SG ++A T LP ++ F + YP Sbjct: 61 PAGSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYP 120 Query: 121 KVHLSLLQGNPRQITEMVRNDQADIAIATEALASGEGLV--SLPCYQWEHVVVVPPDHPL 178 V + L + + + + D+ + L L LP ++ P Sbjct: 121 GVEIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLKA 180 Query: 179 LQSK-SLTLEEIAANPLITYDS--AFSGRSKIDHAFSLRHLKPDVVLEAIDADVIKTYVE 235 L+ K S+ L+ +A PLI + A + I + L P + EAI I V Sbjct: 181 LKGKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAGLTPHIGQEAIQMQTIIGLVS 240 Query: 236 LGMGVGII 243 GMG+ ++ Sbjct: 241 AGMGIALV 248 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 554,101 Number of extensions: 22054 Number of successful extensions: 101 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 9 Length of query: 313 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 231 Effective length of database: 730,157 Effective search space: 168666267 Effective search space used: 168666267 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)