BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3061.p (630 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094187|ref|YP_001099262.1| putative chemotaxis protein Che... 810 0.0 gi|134094526|ref|YP_001099601.1| chemotaxis protein cheA [Hermin... 209 3e-55 gi|134095906|ref|YP_001100981.1| putative composite two componen... 169 3e-43 >gi|134094187|ref|YP_001099262.1| putative chemotaxis protein CheA [Herminiimonas arsenicoxydans] Length = 609 Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/634 (69%), Positives = 498/634 (78%), Gaps = 35/634 (5%) Query: 3 DEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSA 62 D+MLKDFVVEALELATNVEEHLL+LER+P DL LNAVFR+FHTIKGGAGF+NLPAMVSA Sbjct: 2 DDMLKDFVVEALELATNVEEHLLSLERNPGDLNTLNAVFRSFHTIKGGAGFMNLPAMVSA 61 Query: 63 CHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPAELKDIL 122 CHLTENLFDALRTG+ PVTP+AIEAALQASGFVADQL EL+NGAAP+SL++MP L+ IL Sbjct: 62 CHLTENLFDALRTGQVPVTPIAIEAALQASGFVADQLTELANGAAPESLSAMPDALEQIL 121 Query: 123 TQAIEGKSEAAPAAAAPATAPAAPVAPQVQATSAAPASVDGSASVMKDGELDWPAMYQAL 182 AI+GK +AA A + ++ DG DW A+YQA+ Sbjct: 122 NSAIDGKDAVPASAATAAPT---------------------APAIDTDGP-DWNALYQAV 159 Query: 183 VP-GAAVAAPAAADSTASAAAATPAPAAAPAAAAEGEPKAAAPVQQNRRAT-----DSPG 236 VP G A+A PAA+ + +A A A PAA A+G +RR + + Sbjct: 160 VPAGTALATPAASLAATAAVTAASAVPVTPAAPAKGGWDGI-----DRRGSGGGDKTAAA 214 Query: 237 GAKEESIRIDAVKLDALLEVAGESVQAANQASVLLEKLQQFKFEGTAAALMSTLAETLGR 296 G KEESIR+DAVKLDALLEVAGESVQAANQASVLLEKL QF EG AA LM+ LAETL R Sbjct: 215 GIKEESIRVDAVKLDALLEVAGESVQAANQASVLLEKLAQFPVEGQAATLMAALAETLNR 274 Query: 297 ASRYSSELQRATLSTRMQPVGRLFQKFPRLVRELAKDLGKDVDLVITGADTEVDRVVVDS 356 ASRYS+ELQRATLSTRMQPVG+LFQKFPRLVRELAKDLGKDVDL I GA+TEVDRVVVDS Sbjct: 275 ASRYSTELQRATLSTRMQPVGKLFQKFPRLVRELAKDLGKDVDLQIEGAETEVDRVVVDS 334 Query: 357 LYDPLVHMLRNSLDHGIEVD--RAAAGKPNKATISLNAWQAGSSVMIEVFDDGKGMDPDM 414 LYDPLVHMLRNSLDHGIE + R A GK K+ I L AWQ SSVMIE+ DDGKGM+ + Sbjct: 335 LYDPLVHMLRNSLDHGIEDNATRTANGKSTKSVILLKAWQEASSVMIEISDDGKGMNGEQ 394 Query: 415 LRSKALAKGLINEHQALTADEALQLVFLPGFSTKEVASSVSGRGVGMDVVKTAVEKHRGT 474 LR+KA++KGLI + A T +E LQLVFLPGFSTKEVA+SVSGRGVGMDVVKTAVEKHRG Sbjct: 395 LRAKAISKGLIADTAAQTQEEMLQLVFLPGFSTKEVANSVSGRGVGMDVVKTAVEKHRGA 454 Query: 475 IRIESTIGKGTKFSIRLPIELSIIPTMLVRCAGAPLALPMAVVERVVELPETFDEVGGAP 534 I I+ST+G GT+FSIRLPIELSI+PTMLVR + A LALPMAVV+RVVELP+ F+ VGGAP Sbjct: 455 ITIDSTLGVGTRFSIRLPIELSIVPTMLVRSSDAALALPMAVVQRVVELPDEFEHVGGAP 514 Query: 535 VLRDQGRPLPVNSLAGVLGYEPGNERVGIVMAVPHPYILGVESVEGTADLVIKPLTAIHT 594 VLRDQGRPLPV SLAG LGYE G E+VGIV++ P PYIL V +VEGTADLVIKP+TAI Sbjct: 515 VLRDQGRPLPVRSLAGSLGYELGVEKVGIVISAPQPYILSVGAVEGTADLVIKPMTAITV 574 Query: 595 AGITGTARSAEGELVLVVGLSFLLDGCRDLERTA 628 GI GTARSAEGELVLVVGLSFLL+G R + A Sbjct: 575 PGIAGTARSAEGELVLVVGLSFLLEGARQTAKMA 608 >gi|134094526|ref|YP_001099601.1| chemotaxis protein cheA [Herminiimonas arsenicoxydans] Length = 697 Score = 209 bits (533), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 138/403 (34%), Positives = 223/403 (55%), Gaps = 20/403 (4%) Query: 238 AKEESIRIDAVKLDALLEVAGESVQAANQASVLLEKLQQFKFEGTAAALMSTLAETLGRA 297 A+ SIR+ K+D L+ + GE V + + + + + + L L ++ + Sbjct: 302 AESSSIRVGIEKVDQLINLVGELV--------ITQAMIEQRTDSLDPMLHERLLNSVSQL 353 Query: 298 SRYSSELQRATLSTRMQPVGRLFQKFPRLVRELAKDLGKDVDLVITGADTEVDRVVVDSL 357 +R + +LQ A +S RM P+ +F +FPR+VR+LA LGK ++ V GA TE+D+ +++ + Sbjct: 354 TRNTRDLQEAVMSIRMMPMDYVFSRFPRMVRDLAGKLGKKIEFVTQGAATELDKGLIERI 413 Query: 358 YDPLVHMLRNSLDHGIEVD--RAAAGKPNKATISLNAWQAGSSVMIEVFDDGKGMDPDML 415 DPL H++RNS+DHGIE+ R AAGK +SL+A G +++IEV DDG G++ + + Sbjct: 414 VDPLTHLVRNSIDHGIEMPEARTAAGKAPAGQLSLSASHQGGNIIIEVSDDGGGLNRERI 473 Query: 416 RSKALAKGLINEHQALTADEALQLVFLPGFSTKEVASSVSGRGVGMDVVKTAVEKHRGTI 475 +KA KG+ ++ D QL+F PGFST E + VSGRGVGMDVVK + G + Sbjct: 474 LAKARQKGMEVSNEMPDGD-VWQLIFAPGFSTAEAVTDVSGRGVGMDVVKRNITAMGGAV 532 Query: 476 RIESTIGKGTKFSIRLPIELSIIPTMLVRCAGAPLALPMA-VVERVVELPETFDEVGG-A 533 I S+ G GT SI LP+ L+I+ M ++ LP+ VVE + PE E+ G Sbjct: 533 EIRSSKGFGTTISISLPLTLAILDGMSIKVGEEIYILPLGYVVESLQPEPEDVKEISGQG 592 Query: 534 PVLRDQGRPLPVNSLAGVLGYEPG--NERVGIVMAVP---HPYILGVESVEGTADLVIKP 588 V++ +G LP+ L + EP + GIV+ + L ++ + G +V+K Sbjct: 593 KVVKVRGDYLPLIPLYKMFDIEPNFTDPSEGIVVILESEGRKAALFIDELVGQQQVVVKN 652 Query: 589 LTAIH--TAGITGTARSAEGELVLVVGLSFLLDGCRDLERTAV 629 L + + AGI+G +G + L++ ++ LL R L ++ Sbjct: 653 LESNYRKVAGISGATILGDGGVSLIIDVAALLRSSRQLNDESI 695 Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 46/81 (56%) Query: 20 VEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSACHLTENLFDALRTGKAP 79 +E+ LL ++ D E LNA+FRA H+IKGGAG + + H+ E L D +R G+ Sbjct: 1 MEKLLLAVDVSSPDEEDLNAIFRAAHSIKGGAGTFGITDLTEVTHVLETLLDRIRKGEMA 60 Query: 80 VTPLAIEAALQASGFVADQLN 100 + P ++A L A + QL+ Sbjct: 61 LKPEHVDAFLSAKDILKMQLD 81 >gi|134095906|ref|YP_001100981.1| putative composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein [Herminiimonas arsenicoxydans] Length = 1969 Score = 169 bits (428), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 111/345 (32%), Positives = 181/345 (52%), Gaps = 39/345 (11%) Query: 294 LGRASRYSSELQRATLSTRMQPVGRLFQKFPRLVRELAKDLGKDVDLVITGADTEVDRVV 353 L +R + +LQ+ + RM + ++ R+ R+ AK++ K V+L I G+ EVDR V Sbjct: 1462 LTNQARLTRDLQQDLMRVRMVQFASISERLYRVTRQAAKEMDKRVNLDIRGSAVEVDRSV 1521 Query: 354 VDSLYDPLVHMLRNSLDHGIEV--DRAAAGKPNKATISLNAWQAGSSVMIEVFDDGKGMD 411 ++ + P H+LRN++ HGIE R AAGK + + Q G+ V+I DDG+G++ Sbjct: 1522 LEKMAGPFEHLLRNAIVHGIESREKRRAAGKSETGELRIEIRQEGNEVVIHFSDDGQGLN 1581 Query: 412 PDMLRSKALAKGLINEHQALTADEALQLVFLPGFSTKEVASSVSGRGVGMDVVKTAVEKH 471 + +RSKAL GL+ AL+ E L+F PGFST E + ++GRG+GMDVV++ Sbjct: 1582 LNSIRSKALQNGLVKAEDALSDAEVTDLIFHPGFSTAEEITELAGRGIGMDVVRSEAASL 1641 Query: 472 RGTIRIESTIGKGTKFSIRLPIELSIIPTMLVRCAGAPLALPMAVVERVVELPE-----T 526 G + I S GKG F+I LP+ L++ +++ G A+P +VE+V +L Sbjct: 1642 GGRVAIASEPGKGAYFTIHLPLTLAVTQVVILSTGGKTYAIPSVLVEQVQQLKNGPLATA 1701 Query: 527 FDEVGGAPVLRDQGRPLPVNSLAGVLG----------YEP------GNERVGIVMAVPHP 570 ++E GA + Q + +P++ L+ +LG Y P G++RV Sbjct: 1702 YNE--GAVMW--QSQRVPMHYLSALLGDTDAAPVTQQYSPLMILKSGSDRVA-------- 1749 Query: 571 YILGVESVEGTADLVIKPL--TAIHTAGITGTARSAEGELVLVVG 613 L V+ + G ++V+K + GI G GE+VL++ Sbjct: 1750 --LHVDEILGNREVVVKNIGPQLSRMIGIAGATVLGSGEIVLILN 1792 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.130 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,007,230 Number of extensions: 39348 Number of successful extensions: 181 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 4 Length of query: 630 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 543 Effective length of database: 713,682 Effective search space: 387529326 Effective search space used: 387529326 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)