BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3060.p
         (249 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094188|ref|YP_001099263.1| chemotaxis protein CheZ-like [H...   302   9e-84
gi|134094533|ref|YP_001099608.1| chemotaxis regulator CheZ [Herm...   148   3e-37

>gi|134094188|ref|YP_001099263.1| chemotaxis protein CheZ-like
           [Herminiimonas arsenicoxydans]
          Length = 253

 Score =  302 bits (774), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 165/254 (64%), Positives = 193/254 (75%), Gaps = 6/254 (2%)

Query: 1   MSDDVD-LEALFDEISAQTLPGMTASDGGAAAPAGTEPAADSAQPDAEDQSDKPMYERLG 59
           MS DVD  +ALF+EISAQ    +  +     AP      A +A+PD ED S+KPM+ERLG
Sbjct: 1   MSGDVDDFDALFEEISAQRAETVATAAPAVTAPPAPAARAPAAEPD-EDLSEKPMFERLG 59

Query: 60  GIVRLLHDSMRELGYDRSLTDVAEQIGDAQSRLEHIATLTEQAANKVLNALDSGMPAQDR 119
           GIVRLLHDS+RELGYDRSL+DVA +I DAQ RLE++ATLTEQAANKVLNA+D GMP QD 
Sbjct: 60  GIVRLLHDSLRELGYDRSLSDVASEITDAQGRLEYVATLTEQAANKVLNAIDIGMPQQDA 119

Query: 120 LQEQAKDINARWTKLYAGQMSIDEFKALAGDSQKFSSSVMESTEAEKARMLEIMMAQDFQ 179
           L + AK+++ RW +L+ G++S+DEFK LA DS++FS+ V E TEAEKAR+LEIMMAQDFQ
Sbjct: 120 LSKTAKEMDTRWAQLFDGKLSVDEFKKLATDSRQFSAKVAEVTEAEKARLLEIMMAQDFQ 179

Query: 180 DITGQLIKKIVAITATAERELAQLLRDNAPPEVKAQMDAEK----PVSLMNGPSVGGTAM 235
           DITGQLIKKIV IT  AE ELAQLLRDNAPPE+KA     K    PV LMNGPS    AM
Sbjct: 180 DITGQLIKKIVTITHKAESELAQLLRDNAPPEIKAARAEAKPGDAPVQLMNGPSAPAIAM 239

Query: 236 AQDDVDDLLDSLGF 249
            QDDVD LL  LGF
Sbjct: 240 VQDDVDGLLADLGF 253


>gi|134094533|ref|YP_001099608.1| chemotaxis regulator CheZ
           [Herminiimonas arsenicoxydans]
          Length = 212

 Score =  148 bits (373), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/197 (43%), Positives = 126/197 (63%), Gaps = 8/197 (4%)

Query: 57  RLGGIVRLLHDSMRELGYDRSLTDVAEQIGDAQSRLEHIATLTEQAANKVLNALDSGMPA 116
           R+G + R LHDS+R LG+D+ +   +  I DA+ RL+++A +TEQAA +VLNA ++  P 
Sbjct: 20  RVGHMTRALHDSLRGLGFDQLIERASHDIPDARDRLDYVARMTEQAAQRVLNATEAAGPL 79

Query: 117 QDRLQEQAKDINARWTKLYAGQMSIDEFKALAGDSQKFSSSVMESTEAEKARMLEIMMAQ 176
           QDR+Q  A  I+A W +   G  S ++++A+A  +  + +    +T   K  ++ IMMAQ
Sbjct: 80  QDRIQTDAASISATWQQTLQGAFSEEKYRAVAESTLAYLNQTQAATAETKQHLMNIMMAQ 139

Query: 177 DFQDITGQLIKKIVAITATAERELAQLLRDNAPPEVKAQMDAEKPVSLMNGPS---VGGT 233
           DFQD+TGQ+IKK+  +    E++L QLL D APPE+K ++D      L+NGP    VG  
Sbjct: 140 DFQDLTGQVIKKVTELAHGLEQQLLQLLVDYAPPEIKREVD----TGLLNGPQINPVGND 195

Query: 234 AMA-QDDVDDLLDSLGF 249
            +A Q  VDDLLDSLGF
Sbjct: 196 VVAGQAQVDDLLDSLGF 212


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.311    0.127    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 403,991
Number of extensions: 13819
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 170
Effective length of database: 740,042
Effective search space: 125807140
Effective search space used: 125807140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 127 (53.5 bits)