BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3059.p (662 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [... 616 e-177 gi|134096458|ref|YP_001101533.1| putative exogenous ferric sider... 83 4e-17 gi|134094196|ref|YP_001099271.1| putative vitamin B12 receptor [... 75 9e-15 gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 59 1e-09 gi|134093348|ref|YP_001098423.1| putative TonB-dependent recepto... 56 5e-09 >gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [Herminiimonas arsenicoxydans] Length = 651 Score = 616 bits (1588), Expect = e-177, Method: Compositional matrix adjust. Identities = 319/645 (49%), Positives = 434/645 (67%), Gaps = 19/645 (2%) Query: 26 ILSTLIPACWAGAATADLAQPLSAVVVSASRFPNDPAFAPVAATVITAEQIREAGIDNAN 85 ++S L + A + Q L+ V VSASRF + A AP+ ATVITA+QIR++G + N Sbjct: 18 LVSALATLTFPAVAQVETGQQLTPVTVSASRF--ESAEAPIGATVITAQQIRDSGAGSIN 75 Query: 86 EAIRKLGGVYGRQSLAGPQDFPLDLRGFGTNGDQNMVVLVDGVRISENELSTPLLSSIPI 145 EAIRK+ GV+GR S +G D LDLRGFG++ +QN+ + VDG+RISENEL ++S+I I Sbjct: 76 EAIRKIAGVFGRASQSGTSDSSLDLRGFGSSSNQNVAIFVDGIRISENELQPAVMSAIAI 135 Query: 146 ESIERIEIVRGGSSVLYGSGATGGTIQIITRRPQANAGHGTVLGEVGSNGLRAGRAVLAR 205 ES+ERIE+VRGGSSVLYG GATGGTIQIIT+R HG+V+ E+G+ G RA L Sbjct: 136 ESVERIEVVRGGSSVLYGEGATGGTIQIITKRGSTKGTHGSVVAEIGNRGHEEIRASLNA 195 Query: 206 AWDNMSIDASYGKSHADNWRDNSRANQENFATTVQWFASDWRFGLRANLARADFGLPGSL 265 WD SIDA+ G DN+R N+ QENF+ VQW + + G R + AR D LPGSL Sbjct: 196 GWDGFSIDANLGALRTDNYRANNELRQENFSGGVQWALQNGKVGFRVDSARQDLRLPGSL 255 Query: 266 SQAQYDANARQTTKPLDHGSYDNDSITAFLERRFGAFDVAAELAHREKIARSTYVSSGSS 325 + +QY N RQT KP ++GS D+D T F+++R+G ++AA+L++REK ++ + SG Sbjct: 256 TLSQYLQNPRQTLKPTENGSLDSDRYTFFVDQRYGNLELAADLSYREKTSKGDF--SGFL 313 Query: 326 SQVNIRSTQFSPRLRHLIERGPWKNEAIAGIDLAE-----WSSFNNASYGNSDASQHSKA 380 S QFSPR +++ G +NE I G+D ++ SSFN A+ + SQ S A Sbjct: 314 SNAESEVKQFSPRAKYVSNFGSTRNELIVGMDFSDSKRFTQSSFNGAANADEHTSQQSMA 373 Query: 381 LYLRDEIEFDHNARLAAGVRRELFTQQSNSG-AYGRTSAVNAWDVQASYAPLPLLRGFTK 439 +Y R+EI F N R+AAG R E F Q +G +Y ++ ++NA+D+ ASY PL+ F K Sbjct: 374 IYGRNEIRF-GNMRVAAGARHEKFDQDLRAGTSYNQSFSLNAFDLNASYELTPLVSLFGK 432 Query: 440 IGQSYRLATPDENGFTALPIGAVLKPQVSHDLELGATLGNAARQLTLRWFRHRVRDELYY 499 G+SYR+A DEN F + P L PQ S+DLELG GN +L + FRH+++DE++Y Sbjct: 433 AGKSYRVANVDENAFLSKP----LNPQRSNDLELGGLFGNDNNKLIAKVFRHKLKDEIFY 488 Query: 500 DPTANGGFGANSNLAATRHQGVELEGRVQLSETLGWSATYQHINARFDEGDNSGKQLALV 559 DPTA GG GAN NL T+ QGVE+EGR +LS SA QH++A+F +G NSGK++ LV Sbjct: 489 DPTAGGGVGANVNLDRTKRQGVEIEGRARLSSEFFLSAVLQHVSAKFTDGPNSGKEMVLV 548 Query: 560 PANTLSTRINWKSGQHSADVGARWVDRQRMGNDFANTC-ARMPSFTSFDARYALRVSAWE 618 P NT + R+NWK+ + +ADVG +WVD QR G D +N+C AR+PSF + DARYA+RV AWE Sbjct: 549 PKNTATVRLNWKADKQTADVGVQWVDTQRYGKDVSNSCTARIPSFATLDARYAVRVGAWE 608 Query: 619 FAVTGTNLANRKYYSQAY-DCSGGAVSGIYPEDGRAIKFTARYDF 662 FAV+GTNL ++ YYSQA+ DCS GIYP+ GR++KF+AR +F Sbjct: 609 FAVSGTNLTDKDYYSQAFGDCSNN--RGIYPDAGRSVKFSARLNF 651 >gi|134096458|ref|YP_001101533.1| putative exogenous ferric siderophore receptor; Iha adhesin precursor [Herminiimonas arsenicoxydans] Length = 737 Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/198 (33%), Positives = 94/198 (47%), Gaps = 14/198 (7%) Query: 4 AAFPVRHDGPRPRFVLRTSTALILSTLIPACWAGAATADLAQP---LSAVVVSASRFPND 60 FP D PR L L + A AG+A A A P L +VVSAS F + Sbjct: 11 CPFPTTADHPRKESGLARLARLTWPLAVLAATAGSAHAQDAAPEHQLKEIVVSASGFEQE 70 Query: 61 PAFAPVAATVITAEQIREAGIDNANEAIRKLGGVYGRQSLAGPQDFPLDLRGFGTNGDQN 120 AP + TVIT E+++ +++ EA+ + GV S+ + +RG G+ Sbjct: 71 IKNAPASITVITREELQSNRVNSIAEALSNVEGVDVTSSVGKTGGLSIQMRGLGS---AY 127 Query: 121 MVVLVDGVR------ISENELSTPLLSSIPIES-IERIEIVRGGSSVLYGSGATGGTIQI 173 ++L+DG R + N + +P S IERIE++RG + LYGS A GG I I Sbjct: 128 TLILIDGRRQNPAGNVVPNGFGDSASTFMPPPSAIERIEVIRGPMATLYGSDAIGGVINI 187 Query: 174 ITRRPQANAGHGTVLGEV 191 ITR+ G GTV E Sbjct: 188 ITRKVGKTWG-GTVTAET 204 >gi|134094196|ref|YP_001099271.1| putative vitamin B12 receptor [Herminiimonas arsenicoxydans] Length = 622 Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 97/181 (53%), Gaps = 13/181 (7%) Query: 24 ALILSTLIPACWAGAATADLA--QPLSAVVVSASRFPNDPAFAPVAATVITAEQIREAGI 81 A++LS I A ++ + A A Q L VVV+ASR + VITAE+I+++G Sbjct: 17 AIVLS--ISAAFSPLSFAQTASDQSLEPVVVTASRTVQKASDVLADNIVITAEEIQQSGQ 74 Query: 82 DNANEAIRKLGGVYGRQSLAGPQDFPLDLRGFGTNGDQNMVVLVDGVRISENELSTPLLS 141 + + ++K GV ++ + LRG +N Q +V+L+DGVR + L S Sbjct: 75 TSLIDLLQKKRGVEITRNGGAGNSSSVFLRG--SNSKQ-VVLLIDGVRSVSSTLGDATWS 131 Query: 142 SIPIESIERIEIVRGGSSVLYGSGATGGTIQIITR------RPQANAGHGTVLGEVGSNG 195 +IP+ I+R+EIV G S +YG+ A GG IQ+ T+ R +AG GT +V S G Sbjct: 132 AIPLSQIDRVEIVFGPMSSMYGADAVGGVIQVFTKKGSGAPRISFSAGTGTYGEQVVSAG 191 Query: 196 L 196 + Sbjct: 192 V 192 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 22/140 (15%) Query: 67 AATVITAEQIREAGIDNANEAIRKLGGVYGRQSLAGPQDFPLDLRGFGTNGDQNMV---- 122 A TV+T +QI + G N +A+ GV D G + D +V Sbjct: 97 AVTVVTRDQIVDQGATNLQDALTYAAGVRS------------DAYGLDSRTDSVLVRGAS 144 Query: 123 --VLVDGVRISENELSTPLLSSIPIESIERIEIVRGGSSVLYGSGATGGTIQIITRRPQA 180 V +DG+R N+ T P ++ERIE++RG +++ YG G+TGG + ++++RPQA Sbjct: 145 PDVYIDGLR-QANDYYTSAARPDPF-TLERIEVLRGPAAMSYGQGSTGGVVNLVSKRPQA 202 Query: 181 --NAGHGTVLGEVGSNGLRA 198 G LG G L+A Sbjct: 203 EFQGEVGVQLGNFGRKQLQA 222 >gi|134093348|ref|YP_001098423.1| putative TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 763 Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 6/172 (3%) Query: 24 ALILSTLIPACWAGAATADLAQPLSAVVVSASRFPNDPAFAPVAATVITAEQIREA-GID 82 A +L+ +A AT + + L + V++ + + P P IT +QI E Sbjct: 10 AAVLAAFSTCAYAQEATDTVVKTLGTITVTSGQPTSLPTQIPTTIESITGKQIAETINAT 69 Query: 83 NANEAIRKLGGVYGRQSLAGPQDFP-LDLRGFGTNGDQNMVVLVDGVRISE---NELS-T 137 +A +A++ + R+ G D L R GT +V DG+ +S N S T Sbjct: 70 DAEDALKYFPSLLVRKRYIGDYDHAVLASRASGTGNSARSMVYADGILLSNLLGNGASFT 129 Query: 138 PLLSSIPIESIERIEIVRGGSSVLYGSGATGGTIQIITRRPQANAGHGTVLG 189 P + E I+R++++ G S Y + G + +TR P GH V G Sbjct: 130 PRWGMVTPEEIDRVDVLYGPFSAAYPGNSAGAVVDYVTRMPDKFEGHAKVSG 181 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.132 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,241,551 Number of extensions: 49936 Number of successful extensions: 148 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 5 Length of query: 662 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 574 Effective length of database: 710,387 Effective search space: 407762138 Effective search space used: 407762138 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)