BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3058.p
         (341 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094197|ref|YP_001099272.1| vitamin B12 ABC transporter mem...   225   2e-60

>gi|134094197|ref|YP_001099272.1| vitamin B12 ABC transporter
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 349

 Score =  225 bits (574), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 152/287 (52%), Positives = 193/287 (67%), Gaps = 6/287 (2%)

Query: 55  ALLLSLRVPRALTAFAVGGALALSGALMQILLRNPLADPYVLGLSGGSAAGALLAMLVAL 114
           A L+ LR+ RAL+AF  G  LAL+G +MQ LLRNPLADPYVLG+SGG+A GAL AML+  
Sbjct: 68  ATLVELRLSRALSAFVTGATLALAGVMMQALLRNPLADPYVLGVSGGAAVGALGAMLL-F 126

Query: 115 PLGWPLQLVTAPGALLGAGLAMLLLFGLVRQSLRHLAISPLLSSQRLLLTGVMLAAGFGA 174
            L W + L    GA+        +L+ L R+ LR  A S   S+  LLLTGV+LA+G GA
Sbjct: 127 TLTWMVDLAAFGGAIT----VSFMLYALARRDLRGAASSEG-SAPLLLLTGVILASGCGA 181

Query: 175 LISLALSVAPDAQLRGMVFWLIGDLDDARLLPLAALVLLLALLWTLRHAPSLNLLARGDA 234
           L++L LS+APD +LRGMVFWLIGDL   +   L  +VL  AL ++ R A ++N++A    
Sbjct: 182 LVTLMLSIAPDNRLRGMVFWLIGDLSGTQFRLLPWIVLAGALAFSTRTARAINVIALHAE 241

Query: 235 FAQLLGVPVLRLRVMSLCVAAACTAVAVAMAGTIGFVGLVVPHGLRLVIGNEQRLLLPAS 294
            A  LG+ V + R      +A  TA AV+ AG+IGFVGL+VPH  R V+G + RLLLPA+
Sbjct: 242 AASTLGINVGKFRSGLFLCSALLTASAVSNAGSIGFVGLIVPHACRFVLGPDHRLLLPAA 301

Query: 295 VLAGGAALTLADLLARTVVAPVQLPVGVITALIGVPCFLWLLSRSRT 341
            L GGA L LAD LAR++VAP QLPVGVITA+IGVP FL  L + R 
Sbjct: 302 TLVGGAFLVLADTLARSIVAPQQLPVGVITAMIGVPIFLLQLHQLRK 348


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.141    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 382,726
Number of extensions: 9275
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 259
Effective length of database: 730,157
Effective search space: 189110663
Effective search space used: 189110663
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)