BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3057.p (260 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094198|ref|YP_001099273.1| vitamin B12 ABC transporter ATP... 159 1e-40 gi|134094643|ref|YP_001099718.1| ABC transporter ATP-binding pro... 96 2e-21 gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding pr... 91 8e-20 gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 86 1e-18 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 80 9e-17 >gi|134094198|ref|YP_001099273.1| vitamin B12 ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 257 Score = 159 bits (402), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 103/234 (44%), Positives = 135/234 (57%), Gaps = 3/234 (1%) Query: 5 LQARQVSLQAGSRLLLEGLDWAVRPGEFWCVLGRNGIGKSTLLHAAAGLLMTQAGQWSLQ 64 ++ + L+ R+L++ L+W + PGE WCV+GRNG GKSTLL AGL GQ LQ Sbjct: 1 MKTNDLKLRVAERVLVDALNWQIGPGECWCVIGRNGAGKSTLLRTLAGLRGADGGQVVLQ 60 Query: 65 GQPLTQLAPDLMARWRGLLLQHQYDAFAMPLIDAVLAGRFVHH-GGWSRRDEDRTLAMRA 123 + + +AR R L Q + DAF +I+ VL R +H + D D A A Sbjct: 61 ERAIADWPLQDLARERAFLPQGRSDAFGYRVIETVLTARHPYHESAYWESDADHAAAHSA 120 Query: 124 LEQVGLAALAGADLLQLSGGERQRVALATLLAQDPALYLLDEPTSHQDIAAQLQIMRLL- 182 L+ + + ALA D+ LSGGERQRVA+A +LAQD L LLDEPT+ D+A Q+ +M LL Sbjct: 121 LQMMDVDALAERDVRSLSGGERQRVAIAAVLAQDTPLLLLDEPTNALDLAHQVSVMNLLF 180 Query: 183 RTLAAQGKGVVASCHDINLASRFASHILLLGGQRRW-AGPTAEVMRIDALEAAF 235 R + Q K VV HD+NLA A+H LLL G RW AG EVM+ L A Sbjct: 181 RLCSKQKKSVVMVSHDLNLAHSIATHALLLMGDGRWHAGTVDEVMQAPLLSACL 234 >gi|134094643|ref|YP_001099718.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 224 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 106/204 (51%), Gaps = 9/204 (4%) Query: 1 MDCLLQARQVSLQAGSRLLLEGLDWAVRPGEFWCVLGRNGIGKSTLLHAAAGLLMTQAGQ 60 MD LL R + R LL+ + ++ P + + + G NG GKSTL+ AGL A + Sbjct: 1 MDALLSIRHLQKSFHQRRLLDIENLSIAPAQAYVLTGTNGSGKSTLMRILAGLESVDAAE 60 Query: 61 WSLQGQPLTQLAPDLMARWRGLLLQHQYDAFAMPLIDAVLAGRFVHHGGWSRRDEDRTLA 120 QG+ + L+P A ++ HQ+ P++ + + +G R +A Sbjct: 61 VQFQGKSAS-LSPYPRAMRDAIVYVHQH-----PVMFSTSVAENIGYGLLVRGVAKNIIA 114 Query: 121 MR---ALEQVGLAALAGADLLQLSGGERQRVALATLLAQDPALYLLDEPTSHQDIAAQLQ 177 + A+E G+A L LSGGE+QRVALA P L LLDEPT++ D AA+ Q Sbjct: 115 EKVEEAIEWAGIAHLRKNVPSFLSGGEKQRVALARARVLAPKLLLLDEPTANLDGAAREQ 174 Query: 178 IMRLLRTLAAQGKGVVASCHDINL 201 ++ L+ TL ++G V+ +CHD +L Sbjct: 175 VIALIPTLVSEGNSVIMACHDRDL 198 >gi|134096365|ref|YP_001101440.1| phosphite import ATP-binding protein pxtA [Herminiimonas arsenicoxydans] Length = 262 Score = 90.5 bits (223), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 109/215 (50%), Gaps = 9/215 (4%) Query: 4 LLQARQVSLQAGSRLLLEGLDWAVRPGEFWCVLGRNGIGKSTLLHAAAGLLMTQAGQWSL 63 ++Q VS++ G L + G+F +LG +G GKSTLL + AG + Sbjct: 1 MIQLNDVSVRYGDTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSAGTIDV 60 Query: 64 QGQPLTQLAPDLMARWR--GLLLQ-HQYDAFAMPLIDAVLAGRFVHHGG----WSRRDED 116 G L Q L A R G++ Q HQ A L + VL GR +H + E+ Sbjct: 61 VGLGLLQNRRVLQAHRRQTGMVFQQHQLIARRTALQN-VLMGRLGYHTTLRSLFPLSQEE 119 Query: 117 RTLAMRALEQVGLAALAGADLLQLSGGERQRVALATLLAQDPALYLLDEPTSHQDIAAQL 176 + + +RAL++VGL A + QLSGG++QRV +A L Q P L L DEP + D A Sbjct: 120 QRIGLRALDRVGLLHKALTRVDQLSGGQQQRVGIARALTQQPKLILADEPVASLDPATSE 179 Query: 177 QIMRLLRTLAAQ-GKGVVASCHDINLASRFASHIL 210 +++ +LR + + G V S H ++LA +++ I+ Sbjct: 180 KVLEILRQICKEDGISAVVSLHQVDLALKYSDRIV 214 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 86.3 bits (212), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 14/247 (5%) Query: 3 CLLQARQVSLQAGSRLLLEGLDWAVRPGEFWCVLGRNGIGKSTLLHAAAGLLMTQAGQWS 62 +L VS + G L ++ + G+ + ++G NG GK+T + GL +G + Sbjct: 9 IILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFE 68 Query: 63 LQGQPLTQLAPDLMARWRGLLLQHQYDAFA-MPLIDAVLAGRFVH----------HGGWS 111 L G+ + AP L+A+ F M ++ V+ GR V H + Sbjct: 69 LAGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAA 128 Query: 112 RRDED--RTLAMRALEQVGLAALAGADLLQLSGGERQRVALATLLAQDPALYLLDEPTSH 169 R++E R AM L+ VG+A AG LS G+++R+ +A LA DP L LDEP + Sbjct: 129 RQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAG 188 Query: 170 QDIAAQLQIMRLLRTLAAQGKGVVASCHDINLASRFASHILLLG-GQRRWAGPTAEVMRI 228 + +L + LL + A+GK ++ HD+ L I +L G+ G A+V + Sbjct: 189 MNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADVQKN 248 Query: 229 DALEAAF 235 A+ A+ Sbjct: 249 PAVIEAY 255 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 80.1 bits (196), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 106/213 (49%), Gaps = 8/213 (3%) Query: 4 LLQARQVSLQAGSRLLLEGLDWAVRPGEFWCVLGRNGIGKSTLLHAAAGLLMTQAGQWSL 63 +++ + VS GS +L +V G+ V G +G GKSTL+ GL Q G ++ Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 64 QG----QPLTQLAPDLMARWRGLLLQHQYDAFAMPLIDAVLAGRFVHHGGWSRRDEDRTL 119 G P T L P L +R G++ Q+ ++ F I L + G S +E Sbjct: 61 DGISVGDPKTNL-PALRSRI-GMVFQN-FELFPHLSIRENLTLGQIRVLGRSE-EEAAER 116 Query: 120 AMRALEQVGLAALAGADLLQLSGGERQRVALATLLAQDPALYLLDEPTSHQDIAAQLQIM 179 ++ L++VGL A QLSGG++QRVA+A LA DP L DEPTS D +++ Sbjct: 117 GLKYLDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVL 176 Query: 180 RLLRTLAAQGKGVVASCHDINLASRFASHILLL 212 ++ LA G ++ H++ A + A+ ++ + Sbjct: 177 DVMVGLAQDGMTMMVVTHEMGFARKVANRVIFM 209 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 462,783 Number of extensions: 17964 Number of successful extensions: 217 Number of sequences better than 1.0e-08: 38 Number of HSP's gapped: 182 Number of HSP's successfully gapped: 39 Length of query: 260 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 180 Effective length of database: 736,747 Effective search space: 132614460 Effective search space used: 132614460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)