BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3056.p
         (293 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094204|ref|YP_001099279.1| cobalamin ABC transporter perip...   291   4e-80

>gi|134094204|ref|YP_001099279.1| cobalamin ABC transporter
           periplasmic substrate-binding protein [Herminiimonas
           arsenicoxydans]
          Length = 298

 Score =  291 bits (744), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 136/274 (49%), Positives = 188/274 (68%), Gaps = 2/274 (0%)

Query: 22  AHASLTVQDDLGQTVTLAQPARRIISLAPHVTELLYAAGAGAQIVGVSNHSDYPPQATRL 81
           AHA+++VQDD G TV ++QPA+RIISLAPH TEL++AAG G +IVG   +SDYP  A ++
Sbjct: 16  AHATISVQDDAGNTVLVSQPAQRIISLAPHATELIFAAGGGDRIVGTVGYSDYPAAALKI 75

Query: 82  PLLGGYNALDMERILSLKPDLIVAWHSGNKPLQLTRLRSFGIPIYESQPADFGMIAASLE 141
             +G +  +D+ERI++LKPDL+V W  GN   QL  LR  GIP Y S+P     I  S++
Sbjct: 76  ARVGNHQQIDIERIIALKPDLLVVWLHGNSERQLEHLRKLGIPFYYSEPKKLSDIPDSVQ 135

Query: 142 KLGHLAGSDSTAQAAATAFRARWQQLQSQYQGRSPVSVFYQIWSQPLMTLNGQHMVSAVL 201
           +LG L G++  A+  A A RA   +L++QY  R+PV  FYQ+W +P+ TLNG+H++S V 
Sbjct: 136 RLGKLMGTEQQAEKTAAAERAELTRLRTQYSNRAPVRTFYQVWGKPVYTLNGEHIMSDVF 195

Query: 202 RLCGGRNIFADLPQLAPTVSVEAVLAADPQVILTPGDAHDQP--LQRWKQFPRLRAVRDG 259
           RLCGG N+FA L   APTVSVE+VL  +P+ + T G    +   L+ W+Q+P L AV++G
Sbjct: 196 RLCGGENVFAKLSVTAPTVSVESVLLENPEAMFTGGRKEKKTAGLEMWEQYPNLLAVKNG 255

Query: 260 QLYTVNADWLNRPGPRVLEAAQEVCGKLEQARGR 293
            L+ ++ D LNR GPR++E A  VC KLE AR R
Sbjct: 256 NLFPIDGDLLNRAGPRLIEGAAAVCEKLELARSR 289


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 516,156
Number of extensions: 20486
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 212
Effective length of database: 733,452
Effective search space: 155491824
Effective search space used: 155491824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)