BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3055.p
         (279 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094209|ref|YP_001099284.1| pantoate--beta-alanine ligase [...   490   e-140

>gi|134094209|ref|YP_001099284.1| pantoate--beta-alanine ligase
           [Herminiimonas arsenicoxydans]
          Length = 279

 Score =  490 bits (1261), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 231/279 (82%), Positives = 255/279 (91%)

Query: 1   MKIISSIEELRDHLRGQLRTAFVATMGNLHEGHLSLMRLARTHGDPVVASIFVNRLQFGP 60
           MKIIS IEELRDHLRGQLRTAFV TMGNLH+GHLSLMRLAR HGDPVVASIFVNRLQFGP
Sbjct: 1   MKIISCIEELRDHLRGQLRTAFVPTMGNLHDGHLSLMRLARKHGDPVVASIFVNRLQFGP 60

Query: 61  NEDFDKYPRTFQADVEKLEKEGVYVLFAPTEKDMYPEPQEYRVQPPNDLGNILEGEFRPG 120
           NEDFD+YPRTFQADVEKLEKEGVY+LFAPTEKD+YPEPQE+RVQPPNDLGN LEGEFRPG
Sbjct: 61  NEDFDRYPRTFQADVEKLEKEGVYILFAPTEKDLYPEPQEFRVQPPNDLGNTLEGEFRPG 120

Query: 121 FFTGVSTVVMKLFSCVQPRVAVFGKKDYQQLMIVRNMARQFALPTEIVGAETYRAEDGLA 180
           FF+GV+T+V+KLFSCVQP VAVFGKKDYQQLMIVRNM++QFALPTEI+ AETYRAEDGLA
Sbjct: 121 FFSGVTTIVLKLFSCVQPSVAVFGKKDYQQLMIVRNMSKQFALPTEIIAAETYRAEDGLA 180

Query: 181 LSSRNGYLSAEERAEAPLLYQVLNDVANEVRGGQHNVAQVEQLAMQRLAARGWKPDYVAV 240
           LSSRN YLSAEERAEAP L++ LN VANEVR G  ++ Q+E+ AM  L+ RGWKPDY+++
Sbjct: 181 LSSRNMYLSAEERAEAPALFKSLNAVANEVRSGHLDIFQLERQAMADLSQRGWKPDYISI 240

Query: 241 RKRIDLQAPSAADMEQGTPLVVLSAAKLGATRLIDNLEI 279
           RKR +LQ PSA DM QG  LVVL+AAKLGATRLIDNLEI
Sbjct: 241 RKRSNLQPPSAGDMAQGEKLVVLAAAKLGATRLIDNLEI 279


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 519,307
Number of extensions: 20969
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 198
Effective length of database: 733,452
Effective search space: 145223496
Effective search space used: 145223496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)