BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3054.p
         (298 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094210|ref|YP_001099285.1| putative segregation and conden...   463   e-132

>gi|134094210|ref|YP_001099285.1| putative segregation and
           condensation protein A [Herminiimonas arsenicoxydans]
          Length = 292

 Score =  463 bits (1192), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/279 (80%), Positives = 254/279 (91%)

Query: 20  ADAIDITPAGQQDSTPDVIDGVALARLYGEPLFQLPNDLYIPPDALEVFLEAFQGPLDLL 79
           + A D+   G+ D+TPDVIDGVA ARLYGEPLF++P DLYIPPDALEVFLEAF+GPLDLL
Sbjct: 14  SSAPDLVVDGRPDTTPDVIDGVAYARLYGEPLFRMPTDLYIPPDALEVFLEAFEGPLDLL 73

Query: 80  LYLIRKQNFNILDIPLAQVTAQYLEYVEQIRKQNLELAAEYLLMAAMLIEIKSRMLLPAK 139
           LYLIRKQNFNILDIP+AQVT QYL+YV+QIR  NLELAAEYLLMAAMLIEIKSRMLLP +
Sbjct: 74  LYLIRKQNFNILDIPMAQVTKQYLQYVDQIRLHNLELAAEYLLMAAMLIEIKSRMLLPVR 133

Query: 140 KAEPGEEPEDPRAELVRRLLEYEQIKLAAQELDQLPQVGRDYVRTQVHIEQTVVTRWPEV 199
           KA+ GEE  DPRAELVRRLLEYEQ+KLA+Q++D LPQ+GRDYVRTQ++IEQ  VTRWPEV
Sbjct: 134 KADTGEEAGDPRAELVRRLLEYEQMKLASQQIDALPQLGRDYVRTQIYIEQNTVTRWPEV 193

Query: 200 DIDDLKAVWADILKRAKLTQHHHISREELSVREHMTGILRRLQSARFVEFSDLFDPSRGV 259
           DI DL+A WAD++KRAKLT HH ISREELSVREHMT ILRRLQS +FVEF+DLFDP+RGV
Sbjct: 194 DIVDLQAAWADLIKRAKLTAHHMISREELSVREHMTSILRRLQSTKFVEFADLFDPTRGV 253

Query: 260 PVVVVNFIALLELAKETLIEITQAEAFAPIYVRLSYSPS 298
           PV+VVNF+ALLELAKETLIEITQAE FAPIYVRL+Y+PS
Sbjct: 254 PVIVVNFVALLELAKETLIEITQAEPFAPIYVRLAYAPS 292


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 440,478
Number of extensions: 15851
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 217
Effective length of database: 733,452
Effective search space: 159159084
Effective search space used: 159159084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)