BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3053.p
         (67 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094211|ref|YP_001099286.1| hypothetical protein HEAR0976 [...    89   5e-20

>gi|134094211|ref|YP_001099286.1| hypothetical protein HEAR0976
          [Herminiimonas arsenicoxydans]
          Length = 70

 Score = 88.6 bits (218), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 50/67 (74%), Gaps = 1/67 (1%)

Query: 1  MLFGKK-TTYVSEITQFIDELKTKNPKLEESQRAGRALLWDKEPLDLDKTARDKASRVAQ 59
          M F K+   Y SEITQFID LK KNP LE SQ AGRALLWDK P+DL++ AR++AS V Q
Sbjct: 1  MKFSKQHANYQSEITQFIDSLKAKNPNLEASQLAGRALLWDKSPIDLEQQARNQASHVDQ 60

Query: 60 QPYVYQN 66
          Q Y YQN
Sbjct: 61 QAYPYQN 67


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.129    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 108,331
Number of extensions: 2931
Number of successful extensions: 5
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 67
Length of database: 1,000,347
Length adjustment: 39
Effective length of query: 28
Effective length of database: 871,842
Effective search space: 24411576
Effective search space used: 24411576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 121 (51.2 bits)