BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3052.p
         (175 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094212|ref|YP_001099287.1| hypothetical protein HEAR0977 [...   182   1e-47
gi|134095036|ref|YP_001100111.1| putative transmembrane protein ...    57   7e-10

>gi|134094212|ref|YP_001099287.1| hypothetical protein HEAR0977
           [Herminiimonas arsenicoxydans]
          Length = 166

 Score =  182 bits (461), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/155 (57%), Positives = 114/155 (73%), Gaps = 3/155 (1%)

Query: 18  AFLVALAMFGCDRNGNPIEEFGLDKLQKGISSEADVRGVMGQPDTVWEDGGGARTLEYPK 77
            F+  L MFGC  NG  IE+FGL+KL KG+SSEADVR  MG+P+TV ++  GARTLEYPK
Sbjct: 10  GFVCGLLMFGC--NGRAIEDFGLEKLIKGVSSEADVRSAMGEPETVRDEENGARTLEYPK 67

Query: 78  GPEGIRTWMFAIGASGTLIDYRQVLTQEHFDTIRAGMTADQIRREFGRPRSVVQFARKNE 137
           GP G RT+M  + A G    Y QVLT E+F TI AGM+ DQ+RR+ G+PR+VV+F  KNE
Sbjct: 68  GPSGHRTFMINLDAQGVFQAYTQVLTPENFATIEAGMSRDQVRRKLGKPRTVVKFGLKNE 127

Query: 138 EVWDWKY-HYVHEDRLFNVHFDMNTRQVVRTSISE 171
           EVWDW+Y      +R FNVHFD+++ +V RTS+S+
Sbjct: 128 EVWDWRYLEGPVTERFFNVHFDIDSGKVTRTSVSD 162


>gi|134095036|ref|YP_001100111.1| putative transmembrane protein
           [Herminiimonas arsenicoxydans]
          Length = 171

 Score = 56.6 bits (135), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 49  SEADVRGVMGQPDTVWEDGGGARTLEYPKGPEGIRTWMFAIGASGTLIDYRQVLTQEHFD 108
           +EA V    GQP     D  G   LEY + P G  T M     +G L+ Y QVLT E F 
Sbjct: 32  TEAQVIAKRGQPTARIPDVNGY-LLEYTRNPWGQATDMARFDRNGRLVSYEQVLTTEKFA 90

Query: 109 TIRAGM-TADQIRREFGRPRSVVQFARKNEEVWDWKYHYVHE-DRLFNVHFDMN 160
           TI+ G+ T   + R  G P       R   EVW + Y      + + +VHF+ N
Sbjct: 91  TIKPGVSTKTDVLRTIGHPSETSYLPRLQLEVWSYPYKEAGVWNSVMHVHFNNN 144


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 355,917
Number of extensions: 14865
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 99
Effective length of database: 749,927
Effective search space: 74242773
Effective search space used: 74242773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)