BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3048.p (346 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 218 3e-58 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 211 5e-56 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 181 4e-47 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 144 8e-36 gi|134094952|ref|YP_001100027.1| ABC transporter ATP-binding pro... 136 2e-33 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 218 bits (556), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 206/369 (55%), Gaps = 41/369 (11%) Query: 1 MAAISLQGVCKQWGEAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDKPTSGSI 60 MA + ++ + +++G+ V I +++G+F LLGPSGCGK+T LR+IAG D+P +G I Sbjct: 1 MALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKI 60 Query: 61 HIGGQDVTQLPPAQRKISMVFQSYALFPHLNVRDNILFGVRVRKEPRTGYEARLKRVADI 120 + G D+T +PP QR + VFQ+YALFPH+ V NI F + + P++ + ++ + Sbjct: 61 LLDGVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALED 120 Query: 121 LGLTHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 + LT R P +LSGGQ+QRV++ RA++ + L+DEPLS LDAQLR++M+ E+ LQ Sbjct: 121 VRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQ 180 Query: 181 QQLKMTMIYVTHDQTEAMSMADQVILLREGRIEQDAPPADLYAQPATTFAARFIGTPPMN 240 +++ +T +YVTHDQ EA++++ ++ ++ +G IEQ P +Y+ P + F A FIGT N Sbjct: 181 KEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGT--CN 238 Query: 241 L----------------LPLEAHAEGLSVAGSELILKDLGQTPLHLGLRPEHIRLAD--- 281 L +P + L+VAG ++ K + LRPE I+++ Sbjct: 239 LFDGTVTQIAGDTMLLDVPGMGAVKALTVAGVQVGSKG------TIALRPEKIQVSAEIV 292 Query: 282 AGVP------AVVDNVEYFGADTIV------AARIGTAPLLVRAPGQHK-LRAGQAIHLA 328 GVP V + Y G T+ RI T L A G+ + G + +A Sbjct: 293 GGVPDENHFDGYVKELLYMGGVTVYIVETEGGVRIETL-LANSAIGRPRFFEVGDTVDVA 351 Query: 329 WHAEDQYFF 337 W + +F Sbjct: 352 WRVDAGHFL 360 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 211 bits (536), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 104/257 (40%), Positives = 164/257 (63%), Gaps = 6/257 (2%) Query: 3 AISLQGVCKQWGEAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDKPTSGSIHI 62 +I ++ + K++G A+ + E +G+ T LLGPSGCGK+T LR+IAGL++P G + + Sbjct: 2 SIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 63 GGQDVTQLPPAQRKISMVFQSYALFPHLNVRDNILFGVRVR----KEPRTGYEARLKRVA 118 G+D + +R++ VFQ YALF H+ V +NI FG+RVR + + + ++ ++ Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLL 121 Query: 119 DILGLTHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRA 178 +++ L L +R P QLSGGQ+QR+AL RA+ + V L+DEP LDA++R+E+RR +R Sbjct: 122 ELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRR 181 Query: 179 LQQQLKMTMIYVTHDQTEAMSMADQVILLREGRIEQDAPPADLYAQPATTFAARFIGTPP 238 L +L +T I+VTHDQ EA+ +ADQ++L+ +G +EQ P D+Y PA+ F F+G Sbjct: 182 LHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFLGN-- 239 Query: 239 MNLLPLEAHAEGLSVAG 255 +NL H L +G Sbjct: 240 VNLFRGRVHEGVLQSSG 256 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 181 bits (459), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 96/223 (43%), Positives = 140/223 (62%), Gaps = 6/223 (2%) Query: 17 QAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDKPTSGSIHIGGQDVTQL----PP 72 + V + F ++ G LLG SGCGK+T LR IAG + T GSI +GG++++ P Sbjct: 32 EIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEISNAHFTATP 91 Query: 73 AQRKISMVFQSYALFPHLNVRDNILFGVRVRKEPRTGYEARLKRVADILGLTHLLERRPA 132 R+I +VFQ YALFPHL+V DN+ FG+R P +AR+ + ++GL ++ P Sbjct: 92 ETRQIGVVFQDYALFPHLSVADNVGFGLRKLAAPER--QARIAALLTLVGLASQGKKFPH 149 Query: 133 QLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQLKMTMIYVTH 192 +LSGGQQQRVAL RA+ + L+DEP SNLD LR+ + E+R + +++ T + VTH Sbjct: 150 ELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTH 209 Query: 193 DQTEAMSMADQVILLREGRIEQDAPPADLYAQPATTFAARFIG 235 DQ EA ++ADQ+ ++++G I Q +LY +PA F A FIG Sbjct: 210 DQHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVADFIG 252 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 144 bits (362), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 88/237 (37%), Positives = 131/237 (55%), Gaps = 8/237 (3%) Query: 4 ISLQGVCKQWGEAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDKPTSGSIHIG 63 I ++ V K +G Q + V GD V+ GPSG GKST ++ + GL+ GSI + Sbjct: 2 IEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITVD 61 Query: 64 GQDV----TQLPPAQRKISMVFQSYALFPHLNVRDNILFGVRVRKEPRTGYEA--RLKRV 117 G V T LP + +I MVFQ++ LFPHL++R+N+ G ++R R+ EA R + Sbjct: 62 GISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLG-QIRVLGRSEEEAAERGLKY 120 Query: 118 ADILGLTHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIR 177 D +GL ++ P QLSGGQQQRVA+ RA+ D L DEP S LD ++ E+ + Sbjct: 121 LDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 178 ALQQQLKMTMIYVTHDQTEAMSMADQVILLREGRIEQDAPPADLYAQPATTFAARFI 234 L Q MTM+ VTH+ A +A++VI + +G I +D + + + A F+ Sbjct: 181 GLAQD-GMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRARDFL 236 >gi|134094952|ref|YP_001100027.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 227 Score = 136 bits (342), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 122/212 (57%), Gaps = 13/212 (6%) Query: 9 VCKQWGEAQAVKGIDFEVKSGDFTVLLGPSGCGKSTTLRLIAGLDKPTSGSIHIGGQDVT 68 V GE ++ +DF V++GD ++G SG GKST L L+AGLD P+ G++ + G D+ Sbjct: 20 VADATGELTILQAVDFTVQAGDTLAIVGASGSGKSTLLGLLAGLDTPSDGTVKLDGIDIF 79 Query: 69 QLPPAQR------KISMVFQSYALFPHLNVRDNILFGVRVRKE--PRTGYEARLKRVADI 120 L R KI +VFQS+ L HLN +N++ + +R + R EA L RV Sbjct: 80 ALDEDGRAGLRKEKIGVVFQSFQLLGHLNAVENVMLPLELRNDGKAREKAEAMLARV--- 136 Query: 121 LGLTHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 GL+ L+ P LSGG+QQRVAL RA +++ P+ DEP +LDA + + + + L Sbjct: 137 -GLSSRLKHYPKYLSGGEQQRVALARAFVSEPPLLFADEPTGSLDAATGESVIQLMFELN 195 Query: 181 QQLKMTMIYVTHDQTEAMSMADQVILLREGRI 212 Q+ K T++ VTHD + A ++ + I + GR+ Sbjct: 196 QERKSTLVLVTHDPSIA-ALCKRTITIAAGRL 226 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 676,461 Number of extensions: 29472 Number of successful extensions: 234 Number of sequences better than 1.0e-08: 49 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 52 Length of query: 346 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 264 Effective length of database: 730,157 Effective search space: 192761448 Effective search space used: 192761448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)