BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3045.p
         (688 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094215|ref|YP_001099290.1| methionyl-tRNA synthetase [Herm...  1113   0.0  

>gi|134094215|ref|YP_001099290.1| methionyl-tRNA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 710

 Score = 1113 bits (2879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/710 (75%), Positives = 598/710 (84%), Gaps = 24/710 (3%)

Query: 1   MSTSAPRQLFVTTALPYANGAFHIGHIMEYIQADIWVRFQRMQGNEVHFVGADDAHGAPI 60
           MS   PR+LFVTTALPYANGAFHIGHIMEYIQADIWVRFQRMQGN+V FVGADDAHGAPI
Sbjct: 1   MSNPLPRKLFVTTALPYANGAFHIGHIMEYIQADIWVRFQRMQGNQVDFVGADDAHGAPI 60

Query: 61  MIAAEKANITPQEFVANIAAGRKQYLDGFHIAFDNWSSTDSPENHQLSQDIYRALRDEAK 120
           MIAAEKA +TPQ+FV+NIAAGRKQYLDGFHIAFDNWSSTDSPENHQL+Q IY  L+ +A 
Sbjct: 61  MIAAEKAGLTPQQFVSNIAAGRKQYLDGFHIAFDNWSSTDSPENHQLAQQIYLDLK-KAG 119

Query: 121 LISTKTIDQFYDPVKNMFLPDRYIKGECPKCGTKDQYGDSCEHCSAVYSPTDLKNPYSTL 180
           LI++KT++QF+DP KNMFLPDRYIKGECPKC TKDQYGD+CE C+AVYSPTDL NPYS L
Sbjct: 120 LIASKTVEQFFDPEKNMFLPDRYIKGECPKCHTKDQYGDNCEVCAAVYSPTDLINPYSAL 179

Query: 181 SGATPVMKSSEHFFFKLSDPKCVAFLREW--ALDNN---RLQPEVANKAREWL------D 229
           +GATPV+K SEHFFF LSDP+CVAFL EW   LD +    LQ EVANK +EW       D
Sbjct: 180 TGATPVLKHSEHFFFTLSDPRCVAFLEEWVSGLDTDGKTHLQAEVANKVKEWFSARTNPD 239

Query: 230 G--EGGLGDWDISRDAPYFGIEIPDAPGKYFYVWLDAPIGYLASLKNYFVKTGRDFDAFM 287
           G    GL DWDISRDAPYFGIEIPDAPGKYFYVWLDAP+GYLASLKN   K G +FDA+M
Sbjct: 240 GTISEGLNDWDISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKNLLDKRGENFDAYM 299

Query: 288 ADDKTEQYHFIGKDITYFHTLFWPAMLKFAGRKTPTNVFAHGFITVS-GEKMSKSRGTGI 346
           A+   EQ HFIGKDI  FHTLFWPAMLKF+GRKTP  VF HGF+TV+ GEKMSKSRGTG+
Sbjct: 300 AEPALEQIHFIGKDIVNFHTLFWPAMLKFSGRKTPNKVFVHGFLTVNNGEKMSKSRGTGL 359

Query: 347 SPLRYLDIGMNPEWLRYYIAAKLNAKVEDVDFNPDDFVARVNADLIGKYVNIASRAAGFI 406
            PL+YL +GMNPEWLRYY+A KL+A+ ED+DFNP+DF+ARVN+DLIGKYVNIASRAAGFI
Sbjct: 360 DPLKYLSLGMNPEWLRYYLANKLSARNEDIDFNPEDFIARVNSDLIGKYVNIASRAAGFI 419

Query: 407 AKRFEGRVSTQWATADDAFLVKLRGVADEIRSLYEQREYGKALRLVMEQADAINAYVDAN 466
           AK+F+GRV + WATADD F+ KLR VA EI++LY+QREYGKALR +MEQADAINAYVDAN
Sbjct: 420 AKKFDGRVVSDWATADDVFISKLRNVASEIQALYDQREYGKALRTIMEQADAINAYVDAN 479

Query: 467 KPWELAKDSARDAQLHEVCSRLLEAFRILTIYLKPVLPQLAAQVETFLQVQPFQWSDVTA 526
           KPWELAK     A L EVCSRLLEAFRILTIYLKPVLP+LA QVE  L + P QWSDV  
Sbjct: 480 KPWELAKKPENSAALQEVCSRLLEAFRILTIYLKPVLPELAKQVEALLNIAPLQWSDVGT 539

Query: 527 PLADGHVINAYSHLMQRVDPKMLDALFEAPEA--------PAAAATE-AAESAIEELAPE 577
           PL   H +N YSHLM RV+PKMLDALF+ P             + TE AA+S IE +APE
Sbjct: 540 PLPHNHQVNPYSHLMTRVEPKMLDALFDMPAVVDVTVNVPNGTSETEVAADSTIEAIAPE 599

Query: 578 ISIDDFAKVDLRIAKIVNCEAVEGSTKLLRLTLDAGEGRTRNVFSGIASAYKPEELVGKL 637
           I IDDFAK+DLRIAKIVNCE VEGS KLLRLTLD GEGR RNVFSGI SAY+PE+L+GKL
Sbjct: 600 IKIDDFAKIDLRIAKIVNCEHVEGSDKLLRLTLDMGEGRLRNVFSGIKSAYQPEDLIGKL 659

Query: 638 TVMVANLAPRKMKFGVSEGMVLAASAKDEKANPGIYVLNPWPGAEPGMRV 687
           TVMVANLAPRKMKFG+SEGMVLAASA DEK+NPGIY+LNPWPGAEPGMRV
Sbjct: 660 TVMVANLAPRKMKFGISEGMVLAASAADEKSNPGIYILNPWPGAEPGMRV 709


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,244,820
Number of extensions: 49434
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 600
Effective length of database: 710,387
Effective search space: 426232200
Effective search space used: 426232200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)