BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3043.p (482 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094216|ref|YP_001099291.1| glutamyl-tRNA synthetase [Hermi... 801 0.0 gi|134093721|ref|YP_001098796.1| putative glutamyl-Q tRNA(Asp) s... 140 2e-34 gi|134093864|ref|YP_001098939.1| glutaminyl-tRNA synthetase [Her... 61 1e-10 >gi|134094216|ref|YP_001099291.1| glutamyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 467 Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/467 (80%), Positives = 419/467 (89%), Gaps = 1/467 (0%) Query: 17 MTA-TQVRTRFAPSPTGYLHLGGARTALFSWAYARRFGGTFVLRIEDTDVERSTPAAVQA 75 MTA T +RTRFAPSPTGYLH+GGARTALFSWAYAR FGGTFVLRIEDTD+ERSTP AVQA Sbjct: 1 MTARTPIRTRFAPSPTGYLHVGGARTALFSWAYARHFGGTFVLRIEDTDLERSTPEAVQA 60 Query: 76 IIEGMQWLGLEHDEGPFYQMKRMDRYREVIAQMLEQGTAYYCYCTPEEVEAMRERQRAAG 135 IIEGM+WLGL HDEGPFYQM+RMDRYREVIAQML GTAYYCY + EEVEAMRERQRAAG Sbjct: 61 IIEGMEWLGLHHDEGPFYQMQRMDRYREVIAQMLAAGTAYYCYSSSEEVEAMRERQRAAG 120 Query: 136 EKPRYDGTWRPEPGKTLPAIPEGRKPVVRFKNPQDGEVSWNDVVKGPITISNRELDDLVI 195 EKPRYDGTWRPE GKTLPAIP RKPVVRF+NP +G+V+W DVVKG ITISNRELDDLVI Sbjct: 121 EKPRYDGTWRPEAGKTLPAIPADRKPVVRFRNPMEGDVTWLDVVKGQITISNRELDDLVI 180 Query: 196 ARPDGTPTYNFCVVVDDWDMKITHVIRGDDHVNNTPRQINILKALGGTLPEYGHVPMILG 255 AR DGTPTYNFCV VDD DMKITHVIRGDDHVNNTPRQINILKALG LP YGH+PMILG Sbjct: 181 ARQDGTPTYNFCVAVDDSDMKITHVIRGDDHVNNTPRQINILKALGAELPHYGHLPMILG 240 Query: 256 ADGEKLSKRHGAVSVMDYPAQGYLPEAMLNYLARLGWSHGDDEIFSMQQFCEWFDLDHLT 315 ADG KLSKRHGAVSVMDYPAQGYLPEAMLNYLARLGWSHGDDE+FSM+QF EWFDLDHLT Sbjct: 241 ADGAKLSKRHGAVSVMDYPAQGYLPEAMLNYLARLGWSHGDDEVFSMEQFTEWFDLDHLT 300 Query: 316 KAPAQFNPEKLNWLNNHYIKLADNARLAGLVRPLLEAQGAVFDGAPDLAAVIGLLKDRAN 375 K+PAQF+PEKL+W+NNHYIK ADN RLAGL++P++E GA FD APDL AVIGL+K+R Sbjct: 301 KSPAQFDPEKLDWINNHYIKQADNTRLAGLIKPMMENLGAQFDNAPDLPAVIGLMKERVK 360 Query: 376 TVNEIAAAALMFYRQPAPDAALVAQHITDAIKPALADFAQRVATVEWTKEAIAPMIKEVL 435 T+NE+A A++FYRQPAPDAAL+ QH+TDA+KPALA + +++ TV W K+A++ +KEVL Sbjct: 361 TLNELAVTAMLFYRQPAPDAALLTQHLTDAVKPALAQYVEQLKTVAWGKDALSAALKEVL 420 Query: 436 AAHGIKMPQLAMPLRLIVAGQLQTPAIDAVLQLFGREAVKARLAAYL 482 A H +KMPQLAMPLRLI+ GQLQTP+IDAV++LFGRE V AR+A YL Sbjct: 421 ATHKLKMPQLAMPLRLIITGQLQTPSIDAVVELFGREVVLARIANYL 467 >gi|134093721|ref|YP_001098796.1| putative glutamyl-Q tRNA(Asp) synthetase [Herminiimonas arsenicoxydans] Length = 319 Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/249 (35%), Positives = 129/249 (51%), Gaps = 16/249 (6%) Query: 25 RFAPSPTGYLHLGGARTALFSWAYARRFGGTFVLRIEDTDVERSTPAAVQAIIEGMQWLG 84 RFAPSP+G LH G A+ S+ A+ G ++LRIED D R+ P A+ AI++ + G Sbjct: 34 RFAPSPSGPLHAGSLVAAMASYLDAKAHRGLWLLRIEDIDETRTVPGAIAAIMQALAIFG 93 Query: 85 LEHDEGPFYQMKRMDRYREVIAQMLEQGTAYYCYCTPEEVEAMRERQRAAGEKPRYDGTW 144 ++HD Q +R D Y+ ++ G Y C CT +E+ R G P + Sbjct: 94 MQHDGEVLVQSQRKDVYQAAFDRL--AGHVYPCGCTRKEISDSR-----LGIAPDGAAIY 146 Query: 145 RPEPGKTLPAIPEGR-KPVVRFKNP----QDGEVSWNDVVKGPITIS-NRELDDLVIARP 198 PG + G+ +R + P +D +++ND GP T E+ D V+ R Sbjct: 147 ---PGTCRDGLNAGKVSRTLRVRVPDIGQEDESITFNDRWLGPQTQHLATEVGDFVLKRA 203 Query: 199 DGTPTYNFCVVVDDWDMKITHVIRGDDHVNNTPRQINILKALGGTLPEYGHVPMILGADG 258 DG Y VVVDD + +TH++RG D + +T RQI + LG P Y HVP++L G Sbjct: 204 DGYWAYQLAVVVDDAEQGVTHIVRGTDLLESTARQIYLQHMLGLATPSYMHVPVVLNEVG 263 Query: 259 EKLSKRHGA 267 EKLSK+ GA Sbjct: 264 EKLSKQTGA 272 >gi|134093864|ref|YP_001098939.1| glutaminyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 582 Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 21/155 (13%) Query: 3 GPGNPAPAW--FLLAIMTAT------------------QVRTRFAPSPTGYLHLGGARTA 42 G NP PA FL I+ A V TRF P P GYLH+G A++ Sbjct: 8 GSTNPTPASSNFLRGIIEADLAAGKHEKRVDKDGQPLPTVITRFPPEPNGYLHIGHAKSI 67 Query: 43 LFSWAYARRFGGTFVLRIEDTDVERSTPAAVQAIIEGMQWLGLEHDEGPFYQMKRMDRYR 102 ++ AR + G LR +DT+ + V II+ ++WLG + G + Y Sbjct: 68 CLNFGLARDYAGRCNLRFDDTNPTKEEQEYVDTIIDSVKWLGFDWHVGDKEHLYFASDYF 127 Query: 103 EVIAQMLEQ-GTAYYCYCTPEEVEAMRERQRAAGE 136 + + M E TA + Y + + M + + GE Sbjct: 128 DQLYAMAEYLITAGHAYVDSQSADDMAKNRGNFGE 162 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,039,793 Number of extensions: 46708 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 3 Length of query: 482 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 397 Effective length of database: 720,272 Effective search space: 285947984 Effective search space used: 285947984 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)