BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3042.p
         (270 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095889|ref|YP_001100964.1| enoyl-CoA hydratase [Herminiimo...    83   1e-17
gi|134093495|ref|YP_001098570.1| enoyl-CoA hydratase [Herminiimo...    70   1e-13
gi|134095152|ref|YP_001100227.1| putative enoyl-CoA hydratase/is...    67   1e-12

>gi|134095889|ref|YP_001100964.1| enoyl-CoA hydratase [Herminiimonas
           arsenicoxydans]
          Length = 264

 Score = 83.2 bits (204), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 121/259 (46%), Gaps = 13/259 (5%)

Query: 7   HLDIDPRGLATITLNRPDIHNAFDDQLIAHLIDLITQA-GDDARTCVLLLASTGKSFSAG 65
           HL I   G+A I  +RP   NA    +   L  +  +   D +        + G++F AG
Sbjct: 13  HLAIQD-GIAAILFDRPQARNAMTWAMYTELGAICERIRADQSIRVTTFRGAGGEAFVAG 71

Query: 66  ADLAWMRRMADASREDNLRDARKLALLMHTLNSFPAPTLAKVQGAVMGGGVGLVSCCDIV 125
            D+   R  +  S ED +   R +   +  + + P PTLA V G  +GGG+ + + CD  
Sbjct: 72  TDIEQFRNFS--SGEDGIAYERIVDERIGQIEALPMPTLAIVDGWAIGGGLAIAAACDFR 129

Query: 126 VASEAAFFALSEVK-LG--LAPAAISPYVIAKMGVSQARRYFVSAERFPAACAAAMGLVH 182
           +A+ A+ F +   + LG  L+ A I+  V+A  GV +A+R  + AE   A    A G V 
Sbjct: 130 IATPASRFGIPIARTLGNCLSMANIA-RVVAAFGVGRAKRILLLAEVLAADELLAAGFVT 188

Query: 183 EVVPPGELDARTAQLIDTLLANGPQAMRAAKQLVQVANPLQVTPELSEYTAGVIADLRAS 242
           EVV    LDA    L   L +N P  M  +K+ ++     ++T         +I     S
Sbjct: 189 EVVEAAVLDATADALCKKLASNAPITMGVSKEAIR-----RLTQAGLPDGEDLIRACYGS 243

Query: 243 AEGREGLRAFLDKDAPAWT 261
           ++ + G+ AFL+K  P W+
Sbjct: 244 SDFKIGVHAFLEKQRPLWS 262


>gi|134093495|ref|YP_001098570.1| enoyl-CoA hydratase [Herminiimonas
           arsenicoxydans]
          Length = 258

 Score = 70.1 bits (170), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 112/249 (44%), Gaps = 12/249 (4%)

Query: 18  ITLNRPDIHNAFDDQLIAHLIDLITQAGDDARTCVLLLASTGKSFSAGADLAWMRRMADA 77
           ITLNRP   NA +D+L+  L   +     +     +++  + K+F+AGAD+     MA  
Sbjct: 17  ITLNRPAALNALNDKLMDELGKALLSFDANEDIGCMIITGSEKAFAAGADIG---AMATY 73

Query: 78  SREDNLRDARKLALLMHTLNSFPAPTLAKVQGAVMGGGVGLVSCCDIVVASEAAFFALSE 137
           S  D +     +      + S   P +A V G  +GGG  L   CD ++A++ A F   E
Sbjct: 74  SYMD-VYKGDYITRNWEQIRSVRKPVIAAVAGYALGGGCELAMMCDFIIAADTAKFGQPE 132

Query: 138 VKLGLAPAAIS----PYVIAKMGVSQARRYFVSAERFPAACAAAMGLVHEVVPPGELDAR 193
           +KLG+ P A      P  ++K   S+A    ++A    AA A   GLV  VV   +L   
Sbjct: 133 IKLGIIPGAGGTQRLPRSVSK---SKAMDMCLTARMMDAAEAERAGLVSRVVAADKLQEE 189

Query: 194 TAQLIDTLLANGPQAMRAAKQLVQVANPLQVTPELSEYTAGVIADLRASAEGREGLRAFL 253
                  + +     +   K+ +  A    +  E  ++   +     A+ + +EG+RAF+
Sbjct: 190 ALAAATVIASMSLPMVMMIKESINRAYETTL-AEGVQFERRLFHSTFATEDQKEGMRAFV 248

Query: 254 DKDAPAWTH 262
           +K A  + +
Sbjct: 249 EKRAAKFKN 257


>gi|134095152|ref|YP_001100227.1| putative enoyl-CoA
           hydratase/isomerase family protein [Herminiimonas
           arsenicoxydans]
          Length = 301

 Score = 66.6 bits (161), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 102/244 (41%), Gaps = 2/244 (0%)

Query: 18  ITLNRPDIHNAFDDQLIAHLIDLITQAGDDARTCVLLLASTGKSFSAGADLAWMRRMADA 77
           +TL+ P   NA    + A  I+  + A  D     ++L      F AG +L  +  +   
Sbjct: 58  LTLSNPGAKNALHPDMFAAAIETFSTAARDDSIRAVILTGADNFFCAGGNLNTLLELRAQ 117

Query: 78  SREDNLRDARKLALLMHTLNSFPAPTLAKVQGAVMGGGVGLVSCCDIVVASEAAFFALSE 137
            R D       L   +  +   P P +A V+ A  G G  L   CD++VA   A FA+S 
Sbjct: 118 DRADQADAVDSLRGWIEAIRDCPKPVIAAVESAAAGAGFSLALACDLIVAGANAKFAMSY 177

Query: 138 VKLGLAPAAISPYVIAKMGVSQ-ARRYFVSAERFPAACAAAMGLVHEVVPPGELDARTAQ 196
           V +GL P   + + +++    Q A    +  +  PA     +G+++ +V  G     +  
Sbjct: 178 VNIGLTPDGGASWFLSQALPRQLATEIMLEGKPVPAQRLHDLGVINRIVADGATLQTSLD 237

Query: 197 LIDTLLANGPQAMRAAKQLVQVANPLQVTPELSEYTAGVIADLRASAEGREGLRAFLDKD 256
             D L A    A+   K L + A    + P+  E       D     + +EG+ AFL+K 
Sbjct: 238 WADELAALSGHAVERIKSLTREARDHSL-PQHFEIEKNHFVDSLNHRDAQEGIHAFLEKR 296

Query: 257 APAW 260
           AP +
Sbjct: 297 APHY 300


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 512,127
Number of extensions: 20270
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 4
Length of query: 270
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 190
Effective length of database: 736,747
Effective search space: 139981930
Effective search space used: 139981930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)