BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3037.p (305 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 88 6e-19 gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 69 4e-13 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 67 9e-13 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 67 1e-12 gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herm... 66 2e-12 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 87.8 bits (216), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 93/192 (48%) Query: 2 LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 61 ++ D+L+ F+ + S L AA+ LG S VSR + R EE++ + L R +LT + Sbjct: 3 INSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDE 62 Query: 62 GYRLVDYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHLAHFCARNPHI 121 G + A + + + A E + + SG++R+ A F + PH+A F A P I Sbjct: 63 GRLFLKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQI 122 Query: 122 TVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLARHAPIHST 181 T+++ + +L +H DI++ I L+ L L AS DYL RH + Sbjct: 123 TLELTSNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPTTP 182 Query: 182 ADLAQHHFIGYI 193 LA H +G++ Sbjct: 183 EQLAGHQLLGFL 194 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 68.6 bits (166), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/289 (22%), Positives = 118/289 (40%), Gaps = 11/289 (3%) Query: 7 LRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGYRLV 66 ++ F+ + ++ A +L I + VS+ + E+ +G++L +R LT G Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 67 DYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHLAHFCARNPHITVDML 126 + Q+ + + A + + G +++ FGT +AP L + R P + +D+ Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 127 PMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLARHAPIHSTADLAQ 186 R V+L + D+++ + + KL+ + L AS YL H + DL Q Sbjct: 121 LADRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLKQ 180 Query: 187 HHFIGYI-----DDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFL 241 H + Y D+ VF + K A R+ + AA G L P F+ Sbjct: 181 HACLNYSYSSSGDEWVFG---KGKTRAAVRVDGPMRANNGDMLRLAALDGAGLIWQPHFI 237 Query: 242 AQ---QSEQLVPVLAQEIAITRSFWLVASSEQRHVARVSALWSYLRECV 287 Q+ +LV ++ E + + S + A+V YL C+ Sbjct: 238 VADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYLVACM 286 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 67.4 bits (163), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 83/185 (44%) Query: 6 NLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGYRL 65 +L F L + L AA++LG+ +VS+R+ E ++ +L +R LT +G Sbjct: 6 DLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTPEGEIY 65 Query: 66 VDYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHLAHFCARNPHITVDM 125 + ++ + L A + + G N G +++ AT GFG + P L+ F P + V + Sbjct: 66 LADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPEVDVQL 125 Query: 126 LPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLARHAPIHSTADLA 185 R VNL + D + + K++D + AS YL H + DL Sbjct: 126 HLTDRPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKNHGIPLTPRDLQ 185 Query: 186 QHHFI 190 +H+ I Sbjct: 186 KHNCI 190 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 67.0 bits (162), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 79/160 (49%) Query: 33 VSRRMKRFEEQVGSQLFDRNNHGYKLTADGYRLVDYAEQVESTLYAATEELGGHNSKLSG 92 V RR+ E+++G +L R+ LT +G +++ ++ S L A L ++K+SG Sbjct: 33 VGRRIDALEKRLGVRLLHRSTRRLALTEEGSVYLEHCRKMLSELDQAESTLSAGHNKVSG 92 Query: 93 QVRLGATEGFGTFVLAPHLAHFCARNPHITVDMLPMPRFVNLSKHEADISVSIERPLSGN 152 + + A FG +AP+ +F ++P + + R V+L + D+ + I + N Sbjct: 93 HLIISAPASFGRQHVAPYAQNFLEQHPGLKMSFNLTDRVVDLVQEGYDMGIRIGGTIDPN 152 Query: 153 YVVTKLSDYVLKLYASRDYLARHAPIHSTADLAQHHFIGY 192 +V KL+ + + DY +H + DLA+H+ + + Sbjct: 153 FVAIKLAANKRVVCGTPDYFKKHGKPKTLDDLAKHNCLAF 192 >gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 65.9 bits (159), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 1/163 (0%) Query: 7 LRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGYRLV 66 LRIF S DAA +LG V+R +++ E+ G LF R+ ++TA G L+ Sbjct: 8 LRIFRVAAESSSFRDAAVRLGTSPQGVTRAIQQLEQHYGEVLFHRSTRQVRITAFGEGLL 67 Query: 67 DYAEQVESTLYAATEELGG-HNSKLSGQVRLGATEGFGTFVLAPHLAHFCARNPHITVDM 125 D G + LSG VR+ A GT + P L AR+P IT+D+ Sbjct: 68 DQVRPALERFEDLWRTPGSDQQASLSGTVRITAPHSLGTRAVLPALERVAARHPDITLDV 127 Query: 126 LPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYAS 168 R N D+ + + +V K +D L + A+ Sbjct: 128 RLSDRISNTVDEGIDVGIRVGFMRDSRFVARKAADMKLPIVAA 170 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 562,148 Number of extensions: 21491 Number of successful extensions: 80 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 78 Number of HSP's successfully gapped: 9 Length of query: 305 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 224 Effective length of database: 733,452 Effective search space: 164293248 Effective search space used: 164293248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)