BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3034.p
         (297 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093612|ref|YP_001098687.1| tartronic semialdehyde reductas...   163   9e-42
gi|134093500|ref|YP_001098575.1| 2-hydroxy-3-oxopropionate reduc...   106   1e-24

>gi|134093612|ref|YP_001098687.1| tartronic semialdehyde reductase
           [Herminiimonas arsenicoxydans]
          Length = 295

 Score =  163 bits (413), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 109/288 (37%), Positives = 156/288 (54%), Gaps = 10/288 (3%)

Query: 3   ANIVFIGLGNMGLPMAQNLVKAGFSVSGHDLVKASVDKLVAVGGKTEADSMAAVAK-ADV 61
           A + FIGLG MG PMA NL K G  +  HD  KA   +LV  GG T   S A VAK AD+
Sbjct: 2   AKVGFIGLGIMGAPMALNLQKGGHQLFLHDQ-KAPAQELVD-GGATVCASGAEVAKNADI 59

Query: 62  VITMLPASRHVESLYLGDAGVLASAKPGALLIDCSTIAPEAARKVAAAAKARGFDMLDAP 121
           +ITM+P + HV+++   D GV A    G +++D S+I+P A ++ A    A G + LDAP
Sbjct: 60  IITMVPDTPHVDAVLFADNGVAAGLSKGKIVVDMSSISPIATKEFAKKINALGCEYLDAP 119

Query: 122 VSGGTNGATAGTLTFMVGGSAQAFEAAQPYLQKMGKAIYHAGESGSGQTVKVCNNMLLGI 181
           VSGG  GA A +LT MVGGS  AF   +P  + MGK I   G +G GQT KV N +++ +
Sbjct: 120 VSGGEVGAKAASLTIMVGGSEAAFATVKPLFELMGKNITLVGGNGDGQTTKVANQIIVAL 179

Query: 182 LMIGTSEAIRLGMANGMDPKVLSEIMSKSSGRNWTLEVYNPCPGVMETAPASKAYAGGFG 241
            +   SEA+      G DP  + + +      +  LEV+             + +  GF 
Sbjct: 180 NIQAVSEALLFASKAGADPAKVRQALMGGFANSRILEVHG-------ERMIKRTFNPGFR 232

Query: 242 VDLMLKDLGLAVENALATNCAIPLGSTARNLYDIHSMNGAGKLDFSSI 289
           ++L  KDL LA++ A A   ++P  +  + L +  + NG   LD S++
Sbjct: 233 IELHQKDLNLALQGAKAMGVSLPNTAATQELMNACAANGMSGLDHSAL 280


>gi|134093500|ref|YP_001098575.1| 2-hydroxy-3-oxopropionate
           reductase [Herminiimonas arsenicoxydans]
          Length = 287

 Score =  106 bits (265), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 112/212 (52%), Gaps = 12/212 (5%)

Query: 13  MGLPMAQNLVKAGFSVSGHDLVKASVDKLVAVGGKTEADSMAAVAKADVVITMLPASRHV 72
           MG PMA  L++AG+ V+  +  ++  D+L  +G K    + AAV  AD+VITML A   V
Sbjct: 1   MGKPMATRLLQAGYEVTVWNRTRSKADELAPLGAKVAEQAAAAVRAADIVITMLEAGPIV 60

Query: 73  ESLYLGDAGVLASAKPG----ALLIDCSTIAPEAARKVAAAAKARGFDMLDAPVSGGTNG 128
                  A V+A+A PG    AL++D S+     A++      A G   +DAPVSGG  G
Sbjct: 61  -------AQVIAAALPGLQRAALVVDMSSTRQSEAQEAHTLLAAHGVRFIDAPVSGGVVG 113

Query: 129 ATAGTLTFMVGGSAQAFEAAQPYLQKMGKAIYHAGESGSGQTVKVCNNMLLGILMIGTSE 188
           A AG+L  M GGSA  F  A+  L  MG+     G +G GQ  K+CN +++G  +   +E
Sbjct: 114 AQAGSLAIMAGGSADDFAEAEAVLATMGRPTL-VGPAGCGQIAKLCNQLIVGGTLNIVAE 172

Query: 189 AIRLGMANGMDPKVLSEIMSKSSGRNWTLEVY 220
           A+ L  A G DP  +   +      +  LEV+
Sbjct: 173 ALLLAQAGGADPTAVRAAIRGGFAESRILEVH 204


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 517,329
Number of extensions: 19803
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 216
Effective length of database: 733,452
Effective search space: 158425632
Effective search space used: 158425632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)