BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3032.p
         (277 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094985|ref|YP_001100060.1| GntR family transcriptional reg...    60   1e-10

>gi|134094985|ref|YP_001100060.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 312

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 9/100 (9%)

Query: 1   MRAMKTSTSRPQGSALASMAAAARGKTTLADHVTSVLAQQIR--------SGEFAPDARL 52
           ++++  S+S P  S +A+ A AA    T+     S L QQI+        SGE+ P   +
Sbjct: 46  VKSILMSSSHPSLS-IANPAQAAGASATVPSPTFSPLYQQIKALITKSLQSGEWRPGELI 104

Query: 53  PSEMELTERFAVSRTVIREAISRLKSEGLVGSRRGSGTVV 92
           PSE+EL  RF VS+  +R+AI  L +E LV  R+G GT V
Sbjct: 105 PSEIELANRFKVSQGTVRKAIDELSAENLVVRRQGKGTFV 144


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.125    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 373,200
Number of extensions: 11615
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 197
Effective length of database: 736,747
Effective search space: 145139159
Effective search space used: 145139159
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)