BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3030.p
         (397 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094221|ref|YP_001099296.1| hypothetical protein HEAR0987 [...   461   e-131

>gi|134094221|ref|YP_001099296.1| hypothetical protein HEAR0987
           [Herminiimonas arsenicoxydans]
          Length = 392

 Score =  461 bits (1187), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/387 (58%), Positives = 277/387 (71%), Gaps = 8/387 (2%)

Query: 3   SHPNPLHSLDLFCKVVDNYGDIGICWRLARQLAQEHKLAVRLWVDDLVSFQRIWPQVDVQ 62
           + P+ LH   LFC+VVDNYGDIGICWRLARQL QEH + V LWVDDL SFQRI P+V + 
Sbjct: 2   TFPSTLH---LFCRVVDNYGDIGICWRLARQLQQEHGVIVTLWVDDLASFQRICPEVALD 58

Query: 63  AETQQLAGVTVQHWRSQEGSYTTADVADLVVEFFGCEIPPGYVEAMAQRPIKPVWFNLEG 122
            E QQ+AGVTV+HWR+Q+G ++  DVAD+V+EFF C+IPPGY+ AMA+   +PVW NLEG
Sbjct: 59  TEIQQVAGVTVRHWRNQDGVFSAGDVADIVIEFFACDIPPGYIVAMAECNPRPVWLNLEG 118

Query: 123 LSAEAWVEGCHTLPSPHRSLKLTKYFFFPGFNERTGGLSFEADLEAQRHAFLAAEQG-PA 181
           L+AE WVEGCHTLPSPH  L LTK+FFFPGF  +TGGL  E+ LE +R  F +       
Sbjct: 119 LTAEEWVEGCHTLPSPHPRLPLTKHFFFPGFTSKTGGLLHESALEEERRKFQSDTAAIRV 178

Query: 182 FLARLGVTPDEMAGCKVSLFCYDHAPIAELFAAWQASPLPVTCLVPEGVGRAQIEAFLGA 241
           F A+ G+TP EMA  KVSLFCY HAP+  LF AWQ     +TCLVPEGV    +++FLG 
Sbjct: 179 FFAQFGLTPAEMASLKVSLFCYPHAPVKALFDAWQNGASTITCLVPEGVAVEAVQSFLGM 238

Query: 242 PMRAGTAATRAALTVRILPFVPQTDYDKLLWSCDLNFVRGEDSFVRAQWAGKPFIWNIYY 301
             +AG   TR ALTVRILPFV Q+DYD+LLW+CD+NFVRGEDS+VRAQWAGKPFIW+IY 
Sbjct: 239 DAQAGAVQTRGALTVRILPFVAQSDYDRLLWACDINFVRGEDSWVRAQWAGKPFIWHIYP 298

Query: 302 QDKNLHHTKLNAFLKIYDPATPALVDLNRAWNGAYPG----EPDWHATWQTLRAQLPALN 357
           QD+NLHH KL AFL+ Y     +L+  +  WN A P     + DW A WQ L+A    + 
Sbjct: 299 QDENLHHKKLRAFLQRYALDIASLMAFSLHWNDAGPALAEEQADWPALWQRLQADRVCIE 358

Query: 358 GQAEQWLQKMLANGDWMDNLLGFAARL 384
            ++  W ++ML NGD   NLL FA  L
Sbjct: 359 RRSADWRRQMLENGDLAGNLLKFAEGL 385


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 826,968
Number of extensions: 34186
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 313
Effective length of database: 723,567
Effective search space: 226476471
Effective search space used: 226476471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)