BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3025.p
         (379 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094599|ref|YP_001099674.1| cytochrome d terminal oxidase, ...   388   e-109

>gi|134094599|ref|YP_001099674.1| cytochrome d terminal oxidase,
           polypeptide subunit II [Herminiimonas arsenicoxydans]
          Length = 384

 Score =  388 bits (997), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/379 (52%), Positives = 257/379 (67%), Gaps = 1/379 (0%)

Query: 2   IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGIMLPFAAKDDTERRILINSIGPTWEGN 61
           + DY+ L+L WWA +GVL++ FA+TDGFD G GI+LPF A++D ERR++INS+GP WEGN
Sbjct: 6   LIDYDILRLTWWALIGVLLLAFAVTDGFDLGTGILLPFVARNDIERRVVINSVGPVWEGN 65

Query: 62  QTWLITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121
           Q WLI  GGA FAAWP +YA AFSGFY+A+  +L +L  RPV F +RSK  DP WR  WD
Sbjct: 66  QVWLILGGGAIFAAWPQLYAVAFSGFYLAMFAILVALILRPVAFKFRSKREDPGWRARWD 125

Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDSMRVEYTGSFFALLNPFGLLAGLLSVAML 181
             LF  GFVP LI GVA GN+L GVPF  D  M + Y GSFF LLNPF LL GL+SVAML
Sbjct: 126 GVLFFSGFVPSLIFGVALGNVLQGVPFRLDLDMHIFYEGSFFGLLNPFALLCGLVSVAML 185

Query: 182 LMHGAAFAFVKTDAAIGERSRKTVIGAALVTVLLFVIGGFWV-AHLPGYRITSMPDANSA 240
            MHG+A+  +KTD  + ER+R+    AAL TVLL+   G  +  ++ GYRI+SM D    
Sbjct: 186 AMHGSAWLQLKTDGVVAERARRYGSMAALATVLLYGCAGLLLWKYVDGYRISSMIDPVGP 245

Query: 241 FTPLAKTVEVVTGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASGLSVT 300
             PL KTVE   GAWF NY   P T   P LG+ GA+ A L   +R      + S +S++
Sbjct: 246 SNPLLKTVEGHAGAWFVNYTAQPWTMAAPVLGLLGAIGAWLGLRMRREIFTLLCSAVSIS 305

Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTMWDAVSSHKTLGLMFWMVLIFLPLILIYTGWVYR 360
           GI+L+ G S+FPF++PSS+   +SLT+WD+ SSH TL +M  + +IF+P+I+ YT WVY 
Sbjct: 306 GIVLSVGASMFPFILPSSIHPAASLTVWDSSSSHLTLFIMLVVSVIFIPIIVAYTTWVYH 365

Query: 361 VVKGKVTARDIHENEHTAY 379
           V+ GKV  + I +    AY
Sbjct: 366 VLWGKVDEKAIRDETGHAY 384


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.142    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 686,250
Number of extensions: 26612
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 296
Effective length of database: 726,862
Effective search space: 215151152
Effective search space used: 215151152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)