BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3021.p (481 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093857|ref|YP_001098932.1| putative two-component system s... 292 2e-80 gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Hermin... 203 1e-53 gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two... 182 4e-47 gi|134094344|ref|YP_001099419.1| two-component sensor [Herminiim... 89 4e-19 gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 85 7e-18 >gi|134093857|ref|YP_001098932.1| putative two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] Length = 467 Score = 292 bits (748), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 169/460 (36%), Positives = 267/460 (58%), Gaps = 4/460 (0%) Query: 12 TLTTRVTALFALMTCLVVTGLGLYLDRAAGDALAQRADQALIGRVEHFRNLMHDLYNVEQ 71 +LT+RVT +F + + T LG+YL R+ + +R D L+G++ + L+ + Sbjct: 9 SLTSRVTIVFVAIVIIASTSLGIYLYRSFVKEIERRDDTQLLGKLRQVQQLIENPDTPNI 68 Query: 72 MEQRPALFESMMGNEQD--VRIFRRQGEAPFIQSNPDHLVPPAMQPAPVDQPVSAARLLT 129 + +RP F M +++ VRI + G + NP Q + Q + Sbjct: 69 IIERPQYFRDTMSGQENALVRIIGQDG-ISLLDINPQQENISYPQTTEIMQFPGVNAIAN 127 Query: 130 SERADGVRVRWVSALADVGKGRDTVEIIAAYVMVQEDRMMRSYRWRIAGAAAAAILLTSL 189 DG R V+ +A +G + V I A + M YR +IA + + L +L Sbjct: 128 WTSRDGYPGRVVAGMAKLGSTKQPVTIYVARAYAERTDMFSEYRRKIAVSVMLSAALAAL 187 Query: 190 LGFVLLRRGLQPLEAMSQRAAQITPDRLSTRLEQEGMPAELRRVALSFNAMLDRLEAGYD 249 + V+LRRGL+PL M++ AA + P +L +L+ +G P+EL + +FNAML RL+ GY Sbjct: 188 MASVMLRRGLKPLRKMARHAALVRPGKLQHQLDDQGAPSELLPLIHAFNAMLGRLQEGYL 247 Query: 250 HLAQFSGDLAHEIRTPINVLMGQSQVALGQRRSPEDYEQLLESNVEELQRLARIVENILF 309 L+QFS DLAHE RTP+ L+GQSQVALG+ RS ++Y+QL+ SN+EEL+RL+R+++++LF Sbjct: 248 RLSQFSTDLAHEFRTPVTSLLGQSQVALGRPRSADEYKQLVISNMEELERLSRMIDSMLF 307 Query: 310 LAQADHSTLAVECSALDLQEELAKITDYFEGIADERGMHFALQAQGICQANLDMWRRAVS 369 LA+ + ++V L +Q+E ++ ++FE ++DERG+ + Q GI A+ + RRA+S Sbjct: 308 LARVEREQMSVARYPLLVQDEFDRLCNFFEDMSDERGLILSNQGDGIVMADAQLLRRALS 367 Query: 370 NLIINAVRYGEPDSIIRIQAEGDASGSRILVDNRSGNVTPQVMARMFDRFYRGDRSRSAL 429 NL+ NA+R+ + S I +++ +A + V N + P+ M +FDRFYR D +R+ Sbjct: 368 NLLSNAIRHADKGSTIELRSRQEAEFVVLSVTNTGATIGPEHMPHLFDRFYRADSARTDS 427 Query: 430 TESNGLGLAIVKAIMALHRGTATVECPQPGWIRFSLRFPS 469 +ES GLGL+IV+AIM LH G ATV Q L FP+ Sbjct: 428 SESTGLGLSIVRAIMTLHHGRATV-TSQDKITHLELYFPT 466 >gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Herminiimonas arsenicoxydans] Length = 458 Score = 203 bits (517), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 135/459 (29%), Positives = 227/459 (49%), Gaps = 10/459 (2%) Query: 12 TLTTRVTALFALMTCLVVTGLGLYLDRAAGDALAQRADQALIGRVEHFRNLMHDLYNVEQ 71 +LT R+T LFA + V+ G G ++ A + +++ L ++ + ++ + V+ Sbjct: 5 SLTGRLTTLFAATSVAVLVGFGTFISSAIEEHFSEQDQLLLQNELQLIQKVIEE-KGVDS 63 Query: 72 MEQRPALFESMMGNEQDVRIFRRQGEAPFIQSNPDHLVPPAMQPAPVDQPVSAARLLTSE 131 + Q F + N D + R I S + P + + + E Sbjct: 64 ISQT---FGEALHNHPDFYVDVRDLNGKEIYSTFGAFRDAILSRIPSSKTKNGFDVKIDE 120 Query: 132 RADGVRVRWVSALADVGKGRDTVEIIAAYVMVQEDRMMRSYRWRIAGAAAAAILLTSLLG 191 + +R A G + +IA + M +R + A + T +LG Sbjct: 121 HREFQAIR---AELKASAGSPVIVVIAVDKAIHT-HFMSMFRTTLMLYVMVAAIATVMLG 176 Query: 192 FVLLRRGLQPLEAMSQRAAQITPDRLSTRLEQEGMPAELRRVALSFNAMLDRLEAGYDHL 251 + R+GL PL M+ RA +T ++ R+ + +P E+ +A+ NAMLDRL+ L Sbjct: 177 WWAARQGLSPLRTMAARAQTVTSQNMNERMPVDAVPTEMTDLAVKLNAMLDRLQNDIARL 236 Query: 252 AQFSGDLAHEIRTPINVLMGQSQVALGQRRSPEDYEQLLESNVEELQRLARIVENILFLA 311 +FS DLAHE+RTPI+ ++ Q+ V L Q RS DY L SN EELQRL + ++LFLA Sbjct: 237 TEFSADLAHELRTPISNMLTQTHVVLNQSRSTADYRDSLSSNAEELQRLGNTISDMLFLA 296 Query: 312 QADHSTLAVECSALDLQEELAKITDYFEGIADERGMHFALQAQGICQANLDMWRRAVSNL 371 Q ++ + L++ E + +++E +A+E+ + + + + M+RRA++NL Sbjct: 297 QTENGLALPSVAKLNMARECQALLEFYEALAEEKKVVLRCEGDAVVIGDQLMFRRALNNL 356 Query: 372 IINAVRYGEPDSIIRIQAEGDASGSRILVDNRSGNVTPQVMARMFDRFYRGDRSR-SALT 430 + NA+RY I I+ SG+ I V N + ++ +FDRF+R D+SR + + Sbjct: 357 LSNAIRYTPSYGTISIKITSAESGTTITVQNDGEEIPAEIQPHLFDRFFRADKSRKKSES 416 Query: 431 ESNGLGLAIVKAIMALHRGTATVECPQPGWIRFSLRFPS 469 +S GLGL+I +AIM H G+ +V + FSL FPS Sbjct: 417 DSAGLGLSITRAIMQAHGGSVSV-VSRDSKTAFSLYFPS 454 >gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions [Herminiimonas arsenicoxydans] Length = 482 Score = 182 bits (461), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 107/294 (36%), Positives = 171/294 (58%), Gaps = 7/294 (2%) Query: 183 AILLTSLLGFVL----LRRGLQPLEAMSQRAAQITPDRLSTRLEQEGMPAELRRVALSFN 238 A L+ +L+ V+ ++ G +P+ +S+ I +L RL +P EL +A+SFN Sbjct: 181 ATLIVALIALVVAWFAVQWGHRPIRKVSREIRAIRSSQLDVRLSPTDVPIELAELAVSFN 240 Query: 239 AMLDRLEAGYDHLAQFSGDLAHEIRTPINVLMGQSQVALGQRRSPEDYEQLLESNVEELQ 298 ML R+E G+ LA FS D+AHE+RTP+ L Q+QVAL Q RS ++Y ++L SN+EE Sbjct: 241 DMLGRIEDGFAKLANFSADIAHELRTPVTNLSTQTQVALSQVRSADEYREVLYSNLEEFD 300 Query: 299 RLARIVENILFLAQADHSTLAVECSALDLQEELAKITDYFEGIADERGMHFALQAQ-GIC 357 RL+ ++ ++LFLAQ ++ + + D+ + + DYFE +A++ + L Q Sbjct: 301 RLSLMIGDMLFLAQTENDPRNLRLTNTDITGLVQGLFDYFEVLAEDANITLTLSGQVKPI 360 Query: 358 QANLDMWRRAVSNLIINAVRYGEPDSIIRIQAEGDASGSRILVDNRSGNVTPQVMARMFD 417 A+ DM RA+SNL+ NA+RY P S + ++ DA + I V+N + + ++FD Sbjct: 361 IADRDMMLRALSNLLSNAIRYSLPGSSVIVRLHQDAKRTTICVENPGEQIAEDDLPKLFD 420 Query: 418 RFYRGDRSRSALTESNGLGLAIVKAIMALHRGTATVECPQPGWIRFSLRFPSVA 471 RF+R D SR + + GLGLAIVK+I+ H G + G I+F + PS++ Sbjct: 421 RFFRVDPSRQRKSGA-GLGLAIVKSIIEAHDGKVQA-TSRNGLIKFLIELPSIS 472 >gi|134094344|ref|YP_001099419.1| two-component sensor [Herminiimonas arsenicoxydans] Length = 430 Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 11/222 (4%) Query: 254 FSGDLAHEIRTPINVLMGQSQVALGQRRSPEDYEQL-----LESNVEELQRLARIVENIL 308 F + +HE+RTP+ V+ G ++A Q D +Q L+ +E+ QR+ +VE++L Sbjct: 209 FIANASHELRTPLTVINGFLEIAQAQ----PDLDQAIRMSHLKLMIEQGQRMQNLVEDML 264 Query: 309 FLAQADHSTLAVECSALDLQEELAKITDYFEGIADERGMHFALQAQGI-CQANLDMWRRA 367 L + + + +++ L +I E ++ R +L G + + D R A Sbjct: 265 TLTRLESIDYPLRPEHVNIHNLLEQIRQEAEALSGGRH-EISLTIDGPDIEGSADELRSA 323 Query: 368 VSNLIINAVRYGEPDSIIRIQAEGDASGSRILVDNRSGNVTPQVMARMFDRFYRGDRSRS 427 SNL+ NAVRY I I+ + A+G + V + + P+ + R+ +RFYR D+SRS Sbjct: 324 FSNLVSNAVRYTPIHGRIDIKWQNTAAGPQFSVKDTGIGMRPEHLVRLTERFYRVDKSRS 383 Query: 428 ALTESNGLGLAIVKAIMALHRGTATVECPQPGWIRFSLRFPS 469 T+ GLGLAIVK ++ H +E FS++F + Sbjct: 384 RETQGTGLGLAIVKHVLLRHGAVLAIESQPDVGSTFSVQFKT 425 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 85.1 bits (209), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 89/343 (25%), Positives = 146/343 (42%), Gaps = 51/343 (14%) Query: 169 MRSYRWRIAGAA------------------AAAILLTSLLGF------------VLLRRG 198 +R RWR+ A AA++ L SLL F +++ R Sbjct: 70 LRGKRWRVYSEADQDRIIQVAQPKAVRNEMAASMALRSLLPFLVMIPVLALFIWIVVGRS 129 Query: 199 LQPLEAMSQRAAQITPDRLSTRLEQEGMPAELRRVALSFNAMLDRLEAGYDHLAQFSGDL 258 L PL +++ + + + L L E P EL+ + + N +L RL+ F D Sbjct: 130 LYPLHHLARAIGRRSSNALEP-LPGERYPPELQPMLAALNDLLTRLDQTLVTQRAFVADA 188 Query: 259 AHEIRTPINVLMGQSQVALGQRRSPEDYEQL--LESNVEELQRLARIVENILFLAQADHS 316 AHE+RTP+ L Q Q+ R +D ++ E L R +V+ +L LA+ ++ Sbjct: 189 AHELRTPLTALKLQLQLV---ERENDDRQRATGFRKLHERLNRATHLVQQLLTLARHEYR 245 Query: 317 TLAVECSALDLQEELAKITDYFEGIADERGMHFAL---QAQG----ICQANLDMWRRAVS 369 +DL++ A++ + A+ +G+ + QG + N D R + Sbjct: 246 IADRSSQKIDLRQLTARVVSDYAPQAEHKGVDLGIAINDDQGSDAAMITGNQDSLRILLG 305 Query: 370 NLIINAVRYGEPDSIIRIQAEGDASGSRILV---DNRSGNVTPQVMARMFDRFYRGDRSR 426 NL+ NAVRY + + + +L+ DN G + Q R+FDRFYR D + Sbjct: 306 NLVDNAVRYTPSHGRVDVTVNTSTADHTVLLRVKDNGPG-IPVQDQERVFDRFYRRDGTG 364 Query: 427 SALTESNGLGLAIVKAIMALHRGTATVECP-QPGWIRFSLRFP 468 + +GLGL I K I H T + G + ++RFP Sbjct: 365 ES---GSGLGLFIAKTIATQHEATIELSTADSKGGLIVTVRFP 404 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 861,468 Number of extensions: 33752 Number of successful extensions: 199 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 18 Length of query: 481 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 396 Effective length of database: 720,272 Effective search space: 285227712 Effective search space used: 285227712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)