BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3020.p (223 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093856|ref|YP_001098931.1| two-component system response r... 275 1e-75 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 266 8e-73 gi|134093799|ref|YP_001098874.1| response regulator in two-compo... 263 4e-72 gi|134096087|ref|YP_001101162.1| two-component system regulatory... 145 2e-36 gi|134095857|ref|YP_001100932.1| two-component regulatory system... 143 9e-36 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 231 Score = 275 bits (703), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 134/221 (60%), Positives = 172/221 (77%), Gaps = 3/221 (1%) Query: 1 MAILVIEDDPKTGDYLRKGLRESGYAVDLARTGTDGLHLALEQDYDLVVLDVMLPGLDGW 60 M ILVIED+PK GDYL +GL ESG+ V LAR G DGL +A + DL+VLD+MLP L GW Sbjct: 1 MRILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGW 60 Query: 61 QVMSALRSKRD---LPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRR 117 ++++ALRS+ D +PV+ LTAR V+DR++GL+LGADDYL+KPF+F EL+ RIRTLLRR Sbjct: 61 ELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR 120 Query: 118 GVTREAEVYEIADLQLDHVRHKVTRQGLNIALTNKEFMLLHLLIKRQGEALSRSVIASQI 177 R+ + I D+++D ++ KV R G I LT KEF LLHLL +RQ E LSRSVIASQ+ Sbjct: 121 SPVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIASQV 180 Query: 178 WDMNFDSDTNVVDVAIKRLRAKIDAPFEKKLIHTVRSVGYM 218 WD+NF+SDTNV+D A++RLR+KID PFE KLIHT R +GY+ Sbjct: 181 WDINFESDTNVIDAAVRRLRSKIDDPFETKLIHTQRGMGYV 221 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 266 bits (679), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 126/223 (56%), Positives = 175/223 (78%), Gaps = 2/223 (0%) Query: 1 MAILVIEDDPKTGDYLRKGLRESGYAVDLARTGTDGLHLALEQDYDLVVLDVMLPGLDGW 60 M +L++ED+ KTG+YL++GL E+G+AVD A G DG HLA+ +YDL++LDVMLP +DGW Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGW 60 Query: 61 QVMSALRSK-RDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGV 119 +++ ALR+ ++P LFLTARD V DR++GL+LGADDY+VKPF+F+EL+ R+RTLLRRG+ Sbjct: 61 KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGI 120 Query: 120 TRE-AEVYEIADLQLDHVRHKVTRQGLNIALTNKEFMLLHLLIKRQGEALSRSVIASQIW 178 + +++DL LD R TR G + LTNKEF+LL L++ +GE L RS+IASQIW Sbjct: 121 PSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180 Query: 179 DMNFDSDTNVVDVAIKRLRAKIDAPFEKKLIHTVRSVGYMFSE 221 D+NF+SDTNV+DVAI+RLR+K+D +E KLI T+R VGY+ + Sbjct: 181 DINFNSDTNVIDVAIRRLRSKMDDDYEPKLISTIRGVGYVLED 223 >gi|134093799|ref|YP_001098874.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 207 Score = 263 bits (673), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 128/198 (64%), Positives = 160/198 (80%), Gaps = 2/198 (1%) Query: 22 ESGYAVDLARTGTDGLHLALEQDYDLVVLDVMLPGLDGWQVMSALR-SKRDLPVLFLTAR 80 E+G+ VDLAR G DG H+A+ + YDLV+LDVMLP +DGW+++ +LR + + +PVLFLTAR Sbjct: 2 EAGFMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDVDGWRIVKSLREAGKQMPVLFLTAR 61 Query: 81 DHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRG-VTREAEVYEIADLQLDHVRHK 139 VDDR++GL+LGADDYL+KPF+F+EL+ R+RTLLRRG ++E E+ADL LD R K Sbjct: 62 GGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGSAPSQSERLEVADLILDLPRRK 121 Query: 140 VTRQGLNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWDMNFDSDTNVVDVAIKRLRAK 199 TR G I LTNKEF LL LL +RQGE L RS+IASQ+WDMNFDSD+N +DVAI+RLRAK Sbjct: 122 ATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVWDMNFDSDSNAIDVAIRRLRAK 181 Query: 200 IDAPFEKKLIHTVRSVGY 217 ID PFE KLIHTVR +GY Sbjct: 182 IDDPFEPKLIHTVRGMGY 199 >gi|134096087|ref|YP_001101162.1| two-component system regulatory protein [Herminiimonas arsenicoxydans] Length = 229 Score = 145 bits (366), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MAILVIEDDPKTGDYLRKGLRESGYAVDLARTGTDGLHLALEQDYDLVVLDVMLPGLDGW 60 M IL+IED+ L L GY +D A G G LA + +YD V+LD+ LPG+DG Sbjct: 1 MRILIIEDNADIVANLYAFLEPRGYVLDCAANGYAGFALAAQHEYDAVILDIKLPGIDGL 60 Query: 61 QVMSALRS--KRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLR-- 116 + +R + D PVL LTARD +DD++ G GADDYLVKPFS E+ +R++ L+R Sbjct: 61 TLCRKMRDELQNDTPVLMLTARDTLDDKVAGFDSGADDYLVKPFSLLEVEVRLKALIRRA 120 Query: 117 RGVTREAEVYEIADLQLDHVRHKVTRQGLNIALTNKEFMLLHLLIKRQGEALSRSVIASQ 176 RG + + DL D ++V R G+ IALT F +L L+K + +SR + + Sbjct: 121 RGKNQGTNFLSVGDLIFDTSTYQVKRDGVPIALTKTGFKILSCLMKEAPKVVSRETLELE 180 Query: 177 IWDMNFDSDTNVVDVAIKRLRAKIDAPFEKKLIHTVRSVGY 217 +W + D++ + I LR +D ++ TV+ +GY Sbjct: 181 VWG-DHPPDSDALRTHIHALRQALDKSHPFAMLRTVQGIGY 220 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 143 bits (360), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Query: 1 MAILVIEDDPKTGDYLRKGLRESGYAVDLARTGTDGLHLALEQD-YDLVVLDVMLPGLDG 59 M IL++EDD L + L ++GYAVD A G D + AL D Y LV+LD+ LP +DG Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDA-NRALSNDAYALVLLDIALPKMDG 59 Query: 60 WQVMSALRSKRD-LPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRG 118 V+ LR ++ +PVL LTARD +DDR+ GL LGADDY+ KPF E R+R L+RRG Sbjct: 60 LAVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRG 119 Query: 119 VTREAEVYEIADLQLDHVRHKVTRQGLNIALTNKEFMLLHLLIKRQGEALSRSVIASQIW 178 + L+ D H++ + + L+ +E + +L+ RQG+ +++ + +++ Sbjct: 120 QFDAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLF 179 Query: 179 DMNFDSDTNVVDVAIKRLRAKIDAPFEKKLIHTVRSVGYMFSE 221 D +N ++V + R+R K++ P+ I TVR +GY+ + Sbjct: 180 GWGDDGGSNAIEVYVHRMRKKLE-PYNIT-IRTVRGMGYLLEK 220 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.140 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 407,004 Number of extensions: 15873 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 25 Length of query: 223 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 145 Effective length of database: 743,337 Effective search space: 107783865 Effective search space used: 107783865 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)