BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3019.p
         (322 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096286|ref|YP_001101361.1| putative sulfite oxidase subuni...   488   e-139

>gi|134096286|ref|YP_001101361.1| putative sulfite oxidase subunit
           YedY [Herminiimonas arsenicoxydans]
          Length = 326

 Score =  488 bits (1257), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 233/326 (71%), Positives = 272/326 (83%), Gaps = 4/326 (1%)

Query: 1   MLIKIRPDQIEIPTASEITPKDLYLSRRSFMARMAAGSALATGM--GALPQAFAQQ--GR 56
           MLIK  P+ I++P ASEITP+ ++ SRR+F+ ++A GS     +   A  +AFA     +
Sbjct: 1   MLIKRNPNGIDLPFASEITPRAIFESRRAFIQKIALGSIAGGALLEMATREAFAATTAAQ 60

Query: 57  KLPAKLNNAYAVMDKQTAYKDATSYNNFYEFGTDKADPAKNAGTLKTSPWTIAIEGEVNK 116
           KL A  N AY V+DK T+YKDAT+YNNFYEFGTDK  P++ A  +KT PWT+ IEGEV K
Sbjct: 61  KLVATANPAYVVLDKPTSYKDATTYNNFYEFGTDKESPSRYAAAMKTRPWTLTIEGEVKK 120

Query: 117 PMTLDLDALTKLAPLEERIYRLRCVEGWSMVIPWIGYSLSALIRKVEPTGNARYVEFVTL 176
           PMTLD+D+L KLAPLEERIYRLRCVEGWSMVIPW GYSL+ LI+KVEPT NA+YVEFVT 
Sbjct: 121 PMTLDIDSLLKLAPLEERIYRLRCVEGWSMVIPWSGYSLAELIKKVEPTSNAKYVEFVTA 180

Query: 177 ADKKQMPGLSDPILNWPYREGLRMDEANHPLTLLTLGMYGEVLPNQNGAPVRIVVPWKYG 236
            DK+ M GL   +L+WPY EGLR+DEANHPLTLLTLGMYGEVLPNQNGAPVR++VPWKYG
Sbjct: 181 EDKEAMHGLRRAVLDWPYVEGLRIDEANHPLTLLTLGMYGEVLPNQNGAPVRVIVPWKYG 240

Query: 237 FKSAKSIVKIRFVKDEPKTAWNLYAPQEYGFYSNVNPTVDHPRWSQATERRIGEDGFFAP 296
           FKSAKSIVKIRFV+D+P+TAWNL AP+EYGFYSNVNP VDHPRWSQA+ERRIGEDG FA 
Sbjct: 241 FKSAKSIVKIRFVRDQPRTAWNLAAPREYGFYSNVNPQVDHPRWSQASERRIGEDGLFAK 300

Query: 297 KRKTLMFNGYNEVASLYTGMDLRKFY 322
           KR TLMFNGYN+VASLYTGMDL+KF+
Sbjct: 301 KRPTLMFNGYNQVASLYTGMDLKKFF 326


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 645,217
Number of extensions: 27170
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 240
Effective length of database: 730,157
Effective search space: 175237680
Effective search space used: 175237680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)