BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3018.p
         (223 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096285|ref|YP_001101360.1| hypothetical protein HEAR3130 [...   251   2e-68

>gi|134096285|ref|YP_001101360.1| hypothetical protein HEAR3130
           [Herminiimonas arsenicoxydans]
          Length = 218

 Score =  251 bits (640), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 122/210 (58%), Positives = 155/210 (73%), Gaps = 1/210 (0%)

Query: 14  KPRSVTVLWWCFLALAFVPLVRLVVLGFTGGLGANPLEFITHSTGDWTLYLFCITLAVTP 73
            P  +T++       A +P  RL +   T  LGANP+EFIT +TGDWTLY  C+TLA+TP
Sbjct: 7   SPPQLTLIKSMLFIAALLPFGRLALFTLTDQLGANPIEFITRNTGDWTLYFLCMTLAITP 66

Query: 74  LRKLTGLNWLVRMRRMVGLMAFFYLCLHFTTFVWFDHFFDLGEIWKDILKRPFITVGVLA 133
           LR+L+  NWL+R+RRM+GL AFFY CLHFTTF+WFDHFFD+ E+ KD++KRPFITVG  A
Sbjct: 67  LRRLSQWNWLIRLRRMLGLFAFFYACLHFTTFLWFDHFFDVNEMLKDVVKRPFITVGFSA 126

Query: 134 LVLSIPLAITSTNGMVRRLGGKRWQVLHRLVYVIVPLGVLHYWWDKAGKNLIAQPLLFAV 193
            VL IPLAITSTNGMV+RLGGKRWQ LHRLVYVI  LG+LHYWW KAGK+   QP++F  
Sbjct: 127 FVLLIPLAITSTNGMVKRLGGKRWQWLHRLVYVIAALGILHYWWMKAGKHDFEQPIIFGT 186

Query: 194 LVGLMLALRLLWR-KGRAHAAPVVPTAPPR 222
           +V ++L +R+ W  + R+    +  T+  R
Sbjct: 187 IVAVLLLVRVFWAWQKRSKNNALAGTSDCR 216


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.333    0.146    0.499 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 394,870
Number of extensions: 16927
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 145
Effective length of database: 743,337
Effective search space: 107783865
Effective search space used: 107783865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 127 (53.5 bits)