BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3017.p
         (229 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095770|ref|YP_001100845.1| peptide methionine sulfoxide re...   167   3e-43

>gi|134095770|ref|YP_001100845.1| peptide methionine sulfoxide
           reductase (protein-methionine-S-oxide reductase)
           (peptide Met(O) reductase) [Herminiimonas
           arsenicoxydans]
          Length = 179

 Score =  167 bits (424), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 115/178 (64%), Gaps = 3/178 (1%)

Query: 45  TATVVLAGGCFWGVQGVFQHTQGVLQAVSGYAGGKADTASYSQVSAGTTGHAEAVQVTYD 104
           T    L GGCFW  + VFQ  +G+    SGY GG+    SY Q+  GTTGHAE V++T+D
Sbjct: 3   TEIATLGGGCFWCTEAVFQQMKGITAIESGYTGGQVANPSYEQICEGTTGHAEVVRLTFD 62

Query: 105 PRKISYGQILQIYFSVAHDPTQLNRQGPDQGTQYRSAIFTASAQQQQATLAYIAQLNAAK 164
           P  +S+ +IL+++F++ HDPT LNRQG D GTQYRS I+  + +QQ      +A++  A 
Sbjct: 63  PAVVSFREILEVFFTI-HDPTTLNRQGNDVGTQYRSVIYYHTPEQQDMARHVMAEM--AN 119

Query: 165 VFAAPIVTTVAPLQAFYRAEDYHQDYATLHPNQPYIAYNDLPKISNLQKMYPAIYRAD 222
           V+ APIVT ++P + +Y+AEDYHQ+Y   +P Q Y A+   PK++  ++ +    RAD
Sbjct: 120 VWDAPIVTELSPAETYYKAEDYHQNYFRQNPLQGYCAFIVAPKVAKFRQTFRDKIRAD 177


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 381,602
Number of extensions: 12845
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 150
Effective length of database: 740,042
Effective search space: 111006300
Effective search space used: 111006300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)