BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3014.p (283 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein... 147 5e-37 gi|134094440|ref|YP_001099515.1| signaling protein [Herminiimona... 145 2e-36 gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [... 144 5e-36 gi|134094165|ref|YP_001099240.1| putative sensor/regulator prote... 143 1e-35 gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [... 142 2e-35 >gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 599 Score = 147 bits (372), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 139/241 (57%), Gaps = 2/241 (0%) Query: 5 AQFRRAIQRKQFIVVYQPIIALADGACVGAEALVRWQREDGVLLSPDHFLAAAQRHQCLD 64 ++F+RAI+ +F + YQP + L + + +G EAL+RW + L+ P+ F++ A+ + + Sbjct: 346 SRFKRAIKDDEFCLHYQPRVELQNFSVLGLEALIRWNHPEHGLIYPNDFISLAENNDLIV 405 Query: 65 AITDLVLEQIIDDMAL-SLRAHPRLHVAVNVPAHDVNSGRILKVLAAKLDGTGIDPAQLW 123 + + V++ +A+ + P + VA+NV + + +L+ + L I P L Sbjct: 406 PLGNWVVDAACRQLAVWRGQGLPIVPVAINVSSRQLKDDTLLETVMTTLAKYQIAPEMLE 465 Query: 124 LEVTESSSMETL-PCRETLTQARRQGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVI 182 +EVTES +E + L Q ++ G IALDD+GTG+S L+ L LP +K+DRSF+ Sbjct: 466 IEVTESCFIEDFDAASQVLEQLQKNGIKIALDDYGTGFSGLKNLKILPIYAIKIDRSFIR 525 Query: 183 SISDDAPPHPVLGCIIDMAKKLGLKIVAEGVETVAQAHYLEQAGVDYAQGWYYSRPMLAV 242 I +D ++ I +A LGL++VAEGVE+ Q +L+ AG D QG+Y+ RP+ A Sbjct: 526 DIRNDNSDAVIVASTISLAHNLGLQVVAEGVESKEQLVHLKTAGCDQVQGFYFQRPVAAT 585 Query: 243 E 243 E Sbjct: 586 E 586 >gi|134094440|ref|YP_001099515.1| signaling protein [Herminiimonas arsenicoxydans] Length = 711 Score = 145 bits (367), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 126/235 (53%), Gaps = 2/235 (0%) Query: 7 FRRAIQRKQFIVVYQPIIALADGACVGAEALVRWQREDGVLLSPDHFLAAAQRHQCLDAI 66 R A + KQ VVYQP I L A VGAEAL+RWQ ED ++SP+ F+ A+ + + Sbjct: 462 LRTAFEEKQLFVVYQPQIDLVTRAPVGAEALLRWQTEDNTMISPNRFIPIAEYSGLIIEL 521 Query: 67 TDLVLEQIIDDMALSLR-AHPRLHVAVNVPAHDVNSGRILKVLAAKLDGTGIDPAQLWLE 125 + VL Q ++ R ++VNV L +L L+ T P + LE Sbjct: 522 GEWVLRQACQELVRIQRLGFSNFMMSVNVSQVQFRHPHFLGMLRKALEDTNAPPHCIELE 581 Query: 126 VTESSSMETLPCR-ETLTQARRQGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVISI 184 +TES +ME + L Q G IA+DDFGTG+S L +L +L D LK+DR+FV+ I Sbjct: 582 ITESMAMEEPDALIKLLDQIAATGVSIAIDDFGTGFSSLSHLQKLNVDRLKIDRTFVMEI 641 Query: 185 SDDAPPHPVLGCIIDMAKKLGLKIVAEGVETVAQAHYLEQAGVDYAQGWYYSRPM 239 +D + + II + + L L ++AEGVE QA L + G + QG+ +S P+ Sbjct: 642 TDSSRGSSIAEMIIQLGRNLELDVIAEGVEDERQAKILTELGCPFGQGYLFSHPL 696 >gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [Herminiimonas arsenicoxydans] Length = 832 Score = 144 bits (363), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 132/241 (54%), Gaps = 4/241 (1%) Query: 7 FRRAIQRKQFIVVYQPIIALADGACVGAEALVRWQREDGVLLSPDHFLAAAQRHQCLDAI 66 R A++R + V YQP ++L DG+ G E L+RW + ++SP+ F+ A+ + I Sbjct: 578 LRFALERNELSVAYQPKVSLVDGSVRGFELLLRWNSPEYGMISPNEFIPIAETSGMVVPI 637 Query: 67 TDLVLEQIIDDMALSLRAHPRL---HVAVNVPAHDVNSGRILKVLAAKLDGTGIDPAQLW 123 +EQ +A ++P + VAVNV + + LD +G+ P + Sbjct: 638 GMWAMEQACRQLAAWQASYPAMGDITVAVNVSMRQLLHTSFFTQVREILDSSGVVPHTIE 697 Query: 124 LEVTESSSMET-LPCRETLTQARRQGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVI 182 LE+TE+S+M L E L + G +ALDDFGTGYS L YL +LP D+LK+D++FV Sbjct: 698 LELTETSAMANPLQTIENLALLKNLGLRLALDDFGTGYSSLAYLQKLPIDILKIDKTFVH 757 Query: 183 SISDDAPPHPVLGCIIDMAKKLGLKIVAEGVETVAQAHYLEQAGVDYAQGWYYSRPMLAV 242 + ++ ++ +A+ L L+ VAEGVET+ + L++ G D QG+ +S P+ A Sbjct: 758 GLGTKQSDREIIRLMMALAQTLNLQTVAEGVETIMHINELQEMGCDLGQGFIFSPPLSAE 817 Query: 243 E 243 E Sbjct: 818 E 818 >gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans] Length = 818 Score = 143 bits (360), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 127/232 (54%), Gaps = 2/232 (0%) Query: 10 AIQRKQFIVVYQPIIALADGACVGAEALVRWQREDGVLLSPDHFLAAAQRHQCLDAITDL 69 A++ + +VYQP I L DG +G EAL+RWQ L++P F+ A+ + + I Sbjct: 571 ALKNDELFLVYQPQIDLRDGTVIGMEALIRWQHPKRGLIAPMDFIPMAECNGLIIPIGIW 630 Query: 70 VLEQII-DDMALSLRAHPRLHVAVNVPAHDVNSGRILKVLAAKLDGTGIDPAQLWLEVTE 128 VLE ++ L P + VA+N+ A ++ ++ + + ++ G+DP L LEVTE Sbjct: 631 VLETACRHNLQLQKEGLPPIRVAINLSARQLSDRNFVESVQSVIEAIGLDPHYLELEVTE 690 Query: 129 SSSMETLP-CRETLTQARRQGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVISISDD 187 S M + TL + G ++LDDFGTG+S L YL P D LK+D+SF+ + D Sbjct: 691 SMVMHNVEDVVVTLNDLNKMGIQLSLDDFGTGFSSLAYLKRFPIDRLKIDQSFIFNCDSD 750 Query: 188 APPHPVLGCIIDMAKKLGLKIVAEGVETVAQAHYLEQAGVDYAQGWYYSRPM 239 + II +A L +K++AEGVE +L++ G D QG++ SRP+ Sbjct: 751 PGDAIIAQTIIALAHGLKIKVIAEGVEKSEHLSFLKKNGCDEGQGYFISRPL 802 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] Length = 715 Score = 142 bits (358), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/255 (35%), Positives = 137/255 (53%), Gaps = 4/255 (1%) Query: 7 FRRAIQRKQFIVVYQPIIALADGACVGAEALVRWQREDGVLLSPDHFLAAAQRHQCLDAI 66 R A++RK+F + YQP +G VGAEAL+RWQ +++PD F+A A++ + I Sbjct: 445 LRLALERKEFKLHYQPKFNTPNGIVVGAEALLRWQHPTRGMIAPDDFIALAEKTGLIVPI 504 Query: 67 TDLVLEQIIDDMAL-SLRAHPRLHVAVNVPAHDVNSGRILKVLAAKLDGTGIDPAQLWLE 125 + VL++ M + + VAVN+ A ++ +++++ L + L LE Sbjct: 505 GEWVLDEACRQMRIWHDEGNQHWKVAVNLSAVQFSNDHLIELVQTTLARNNFPASGLILE 564 Query: 126 VTESSSMETLPCRET-LTQARRQGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVISI 184 VTES++M + T L + G I++DDFGTGYS L YL LP LK+DR F+ + Sbjct: 565 VTESTAMHDVEASLTILDKLAGLGIDISIDDFGTGYSSLLYLKRLPATELKIDRGFIRDL 624 Query: 185 SDDAPPHPVLGCIIDMAKKLGLKIVAEGVETVAQAHYLEQAGVDYAQGWYYSRPMLAVEF 244 + + ++ II + + L L IVAEGVET Q YL G D QG+ RPM +F Sbjct: 625 AQGSNDSSIVAAIIALGRSLNLHIVAEGVETEEQQAYLRVLGCDAMQGYLMGRPMAPDQF 684 Query: 245 --ARYCAAPVTRPAA 257 A + AA + AA Sbjct: 685 MDAIHTAALASEQAA 699 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 522,734 Number of extensions: 21033 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 79 Number of HSP's successfully gapped: 15 Length of query: 283 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 202 Effective length of database: 733,452 Effective search space: 148157304 Effective search space used: 148157304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)