BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3013.p (702 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095128|ref|YP_001100203.1| putative transporter with ATPas... 184 1e-47 gi|134096472|ref|YP_001101547.1| putative ABC transporter [Hermi... 132 4e-32 gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding pro... 132 7e-32 gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding pro... 119 6e-28 gi|134094288|ref|YP_001099363.1| putative ABC transporter permea... 117 3e-27 >gi|134095128|ref|YP_001100203.1| putative transporter with ATPase [Herminiimonas arsenicoxydans] Length = 585 Score = 184 bits (467), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 160/552 (28%), Positives = 270/552 (48%), Gaps = 31/552 (5%) Query: 144 ILEVVIASVVMSIIALGASIFSMQVYDRVIPTHGVATLIVLAIGVSLAILFELGMKFARS 203 ++E+V+A ++++ L I+S VYD+VI H TL L +G+ L + E ++ R+ Sbjct: 52 LVEIVVAGFLINVFGLLLPIYSRLVYDKVIGNHIPDTLWALTLGMLLFLALEFVLRVIRT 111 Query: 204 HIMDNVVSGLDAKLSQALFERLLSVRVDQLPGSVGSLAGQLRGYEQIRSFYTSQTLFTLV 263 ++ + D A+ ++LL+ RV VG + + R R +S + ++ Sbjct: 112 FYVEQLAGKFDIDFDLAVVKKLLAARVSW---PVGVVLAKYRDITSARDLLSSNYMLVII 168 Query: 264 DLPLGLLFVLVIAFIASPWMAMVPTLFGLAAIA--IGYLSNRKVVRLADKSAAASNLKTG 321 D P LL++L I I P + +V GL A + + R+A A KT Sbjct: 169 DFPFLLLYLLAIGLIGGPILWVVLVGGGLLVGAQLLCKIPANDYARVAMTVGAT---KTD 225 Query: 322 LLVETVEGVETIKSGSGGWKFLSRWIDVSAESIRSDMAMRAIGDHAGYIAAMLQQLSYS- 380 L V G+ET+K+ + R D+ + +A G + + Y+ Sbjct: 226 KLAGLVFGIETLKTSA----LQKRVFDLFSRDAEVSGVTQAKGRFWASVGYTISSSGYTL 281 Query: 381 ---TTVIVGSFLVINGQITMGALIACSILGGR---ILAPVAMIPGLMVQRAHT-KATLAG 433 T++VG ++V +T+GALIA S+L GR +L+ VAM+ G R T K Sbjct: 282 MTVATLVVGVYMVEANALTVGALIASSMLVGRAASMLSSVAMVLG----RIDTFKQARTS 337 Query: 434 LEKIYALQTDQGSDRQLTPDSLRGEFRVEEAKFTYAGSLLNAMTIDQLT--IKAGERVAI 491 E+++ Q +++ D + E R++ A +++ + Q++ I GE+V + Sbjct: 338 FEELFV--DTQNTNKTNEVDRQQIEGRIQVANLSFSIKPDEPAMLKQISFIINPGEKVGL 395 Query: 492 LGPIGAGKSTILRLLSGLYRPQQGRILLDGLDLSNINRLTLNQHIGYLQQDHRLFVGTLR 551 +G G+GKST+LR L+G++ P G++L+DG+ ++ ++ + I Y QD LF GTL Sbjct: 396 VGRSGSGKSTLLRCLAGVHAPDVGQVLMDGISVAAYSQEVRMRSIAYKPQDPFLFDGTLA 455 Query: 552 ENLLIGLPDPGDEVLRQVMERTGLLRLVSAHPKGLDLPIQEGGRGLSGGQRQLVAFTRLL 611 N+ I + + + + + L++ LD + G LSGGQRQ+VA R + Sbjct: 456 SNIFID-NTISTSIYQIALHVSCMDELLAGGQLRLDQMLVAPG-NLSGGQRQMVALARAI 513 Query: 612 LCRPDIFLLDEPTASMDEDLERHCLNVLNEEINGGRTLVVVTHKPAFLPMVERVIVVVGN 671 P++ LLDEPT +D+ E + L RTLVV TH P L ++R+IV+ Sbjct: 514 ASTPNVLLLDEPTTGVDQMTENKIIERL-VAFAANRTLVVATHSPVLLKQMDRIIVINDG 572 Query: 672 RIVLDGPRDAVL 683 +IV DGPR +L Sbjct: 573 KIVADGPRAQIL 584 >gi|134096472|ref|YP_001101547.1| putative ABC transporter [Herminiimonas arsenicoxydans] Length = 726 Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 129/516 (25%), Positives = 245/516 (47%), Gaps = 18/516 (3%) Query: 179 ATLIVLAI-GVSLAILFELGMKFARSHIMDNVVSGLDAKLSQALFERLLSVRVDQLPGS- 236 ++L+VL + G+ + + G+ +AR++I+ V + A L +E LL + ++ G Sbjct: 191 SSLVVLYLSGLFGSAVLAWGLGWARTYILALVSERIGADLRTTTYEHLLRLSLEYFGGKR 250 Query: 237 VGSLAGQLRGYEQIR-SFYTSQTLFTLVDLPLGLLFVLVIAFIASPWMAMVPTLFGLAAI 295 G L ++ G E R + S L L ++ I +PW+A+V TL L I Sbjct: 251 TGDLMTRI-GSETDRICVFLSLHLLDFFTDVLMIIMTAAILISINPWLALV-TLLPLPFI 308 Query: 296 A-IGYLSNRKVVRLADKSAAASNLKTGLLVETVEGVETIKSGSGGWKFLSRWIDVSAESI 354 A + ++ K+ +K + T +L +T+ G+ +K+ + + R+ + + ++ Sbjct: 309 AWMIHVVRDKLRNGFEKIDRIWSQVTNVLADTIPGIRVVKAFAQEKREAVRFREANKHNL 368 Query: 355 RSDMAMRAIGDHAGYIAAMLQQLSYSTTVIVGSFLVINGQITMGALIACSILGGRILAPV 414 + + + +L ++ +G + V G IT+G L A R + Sbjct: 369 AINDRVNKVWSLFSPTVTLLTEIGLLVVWALGIWQVSQGLITVGVLTAFLAYITRFYTRL 428 Query: 415 AMIPGLMVQRAHTKATLAGLEKIYALQTDQGSDRQLTP----DSLRGEFRVEEAKFTYAG 470 + ++ + T+ G ++I+ + S + T +++G+ ++ F Y Sbjct: 429 DSMSRIV---SVTQKAATGAKRIFDILDHVSSVPEATNPVHLTNVQGKITIKNIGFRYGN 485 Query: 471 -SLLNAMTIDQLTIKAGERVAILGPIGAGKSTILRLLSGLYRPQQGRILLDGLDLSNINR 529 +++ + +D I+ GE + ++G G+GKST++ L+ Y G IL+DG+D+ +I Sbjct: 486 RAVIRGLDLD---IQPGEMIGLVGHSGSGKSTLVNLICRFYDVSDGAILVDGIDVRSIPI 542 Query: 530 LTLNQHIGYLQQDHRLFVGTLRENLLIGLPDPGDEVLRQVMERTGLLRLVSAHPKGLDLP 589 ++IG + Q+ LF GT+ +N+ G PD E + + P G D Sbjct: 543 PEYRRNIGLVLQEPFLFFGTIADNIAYGKPDASREEIIAAARAANAHEFILRLPHGYDSM 602 Query: 590 IQEGGRGLSGGQRQLVAFTRLLLCRPDIFLLDEPTASMDEDLERHCLNVLNEEINGGRTL 649 + E G+ LSGG+RQ ++ R LL P I +LDE T+S+D ER L+ + GRT Sbjct: 603 VGERGQTLSGGERQRISIARALLIDPHILILDEATSSVDTTTEREIQKALDNLVR-GRTT 661 Query: 650 VVVTHKPAFLPMVERVIVVVGNRIVLDGPRDAVLAR 685 + + H+ + L +R++V+ +IV G D +LAR Sbjct: 662 IAIAHRLSTLRRADRIVVMDRGQIVEVGSHDELLAR 697 >gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 618 Score = 132 bits (331), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 133/236 (56%), Gaps = 11/236 (4%) Query: 455 LRGEFRVEEAKFTYAGSLLNAMTIDQ--LTIKAGERVAILGPIGAGKSTILRLLSGLYRP 512 +RGE + + F Y G+ IDQ LTI+ GE+V ++G GAGKSTI+ LL Y Sbjct: 356 MRGELKFDHVGFAYGGT---RAVIDQFNLTIRPGEKVGLVGRSGAGKSTIVNLLLRFYDL 412 Query: 513 QQGRILLDGLDLSNINRLTLNQHIGYLQQDHRLFVGTLRENLLIGLPDPGDEVLRQVMER 572 +QGRIL+DG D++++ + +L +G + QD L ++R+N+L G PD + + +R Sbjct: 413 EQGRILIDGQDIAHVTQNSLRAQVGMVTQDTSLLHRSVRDNILYGRPDASEADMIDAAKR 472 Query: 573 TG----LLRLVSAHPK-GLDLPIQEGGRGLSGGQRQLVAFTRLLLCRPDIFLLDEPTASM 627 +L L A + D + E G LSGGQRQ +A R++L I LLDE T+++ Sbjct: 473 AEAHDFILTLSDAKGRTAYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSAL 532 Query: 628 DEDLERHCLNVLNEEINGGRTLVVVTHKPAFLPMVERVIVVVGNRIVLDGPRDAVL 683 D ++E L E + G+T+V + H+ + + ++R+IV+ RIV G +L Sbjct: 533 DSEVEAAIQTSLYELME-GKTVVAIAHRLSTIAAMDRLIVLDKGRIVEQGSHRELL 587 >gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 648 Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 88/300 (29%), Positives = 153/300 (51%), Gaps = 11/300 (3%) Query: 390 VINGQITMGALIACSILGGRILAPVAMIPGLMVQRAHTKATLAGLEKIYALQTDQGSDRQ 449 VI+G +T+G L+ + ++ P+ + G++ + K +LA +E++++L DQ + Sbjct: 310 VISGTMTLGDLVLVNAFMIQLYIPLNFL-GVIYRE--IKQSLADMERLFSL-LDQHREIA 365 Query: 450 LTPDSLRGEFRVEEAKFTYAGSLLNA-----MTIDQLTIKAGERVAILGPIGAGKSTILR 504 P++ + E KF++ G A +D TI AG A++G G+GKST+ R Sbjct: 366 DKPNTQALVVQGAEVKFSHVGFSYEAKRQILFDVD-FTIAAGTTTAVVGHSGSGKSTLSR 424 Query: 505 LLSGLYRPQQGRILLDGLDLSNINRLTLNQHIGYLQQDHRLFVGTLRENLLIGLPDPGDE 564 LL Y +G IL+DG D+ ++ + +L IG + QD LF T+ N+ G P + Sbjct: 425 LLFRFYDVNEGAILIDGQDVRDVTQASLRNAIGIVPQDTVLFNDTIEYNIAYGKPGASKD 484 Query: 565 VLRQVMERTGLLRLVSAHPKGLDLPIQEGGRGLSGGQRQLVAFTRLLLCRPDIFLLDEPT 624 + + + + + P G + E G LSGG++Q VA R LL P I + DE T Sbjct: 485 DIVAAAKSAYIHDFIESLPDGYATMVGERGLKLSGGEKQRVAIARTLLKHPAILIFDEAT 544 Query: 625 ASMDEDLERHCLNVLNEEINGGRTLVVVTHKPAFLPMVERVIVVVGNRIVLDGPRDAVLA 684 +++D E+ + +EI RT +V+ H+ + + +++V+ RIV G +LA Sbjct: 545 SALDSKAEQ-AIQAQLKEIAKDRTTMVIAHRLSTIVDAAQILVLDHGRIVERGTHAQLLA 603 >gi|134094288|ref|YP_001099363.1| putative ABC transporter permease [Herminiimonas arsenicoxydans] Length = 579 Score = 117 bits (292), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 117/213 (54%), Gaps = 1/213 (0%) Query: 472 LLNAMTIDQLTIKAGERVAILGPIGAGKSTILRLLSGLYRPQQGRILLDGLDLSNINRLT 531 L A++ + IKAGE VA++GP GAGK+++ +LL Y PQ+G I LDG+D+ ++ Sbjct: 352 LTPAISNFSIAIKAGETVAVVGPSGAGKTSLFQLLLRFYDPQEGVIELDGVDIRQLDLHA 411 Query: 532 LNQHIGYLQQDHRLFVGTLRENLLIGLPDPGDEVLRQVMERTGLLRLVSAHPKGLDLPIQ 591 L IG + QD +F EN+ G PD DE + V + + P+G + Sbjct: 412 LRNTIGIVPQDTVIFSANAMENIRYGRPDASDEEVIAVAKMAAAHEFIDRLPEGYQSFLG 471 Query: 592 EGGRGLSGGQRQLVAFTRLLLCRPDIFLLDEPTASMDEDLERHCLNVLNEEINGGRTLVV 651 E G LSGGQRQ +A R LL P + LLDE T+++D + ER + L E GRT +V Sbjct: 472 ERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSAL-EAAMVGRTTLV 530 Query: 652 VTHKPAFLPMVERVIVVVGNRIVLDGPRDAVLA 684 + H+ A + R+IV+ IV G +++A Sbjct: 531 IAHRLATVQRAHRIIVMEHGHIVETGTHASLVA 563 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.139 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,243,035 Number of extensions: 50749 Number of successful extensions: 311 Number of sequences better than 1.0e-08: 35 Number of HSP's gapped: 282 Number of HSP's successfully gapped: 35 Length of query: 702 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 614 Effective length of database: 710,387 Effective search space: 436177618 Effective search space used: 436177618 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)