BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3012.p
         (392 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095130|ref|YP_001100205.1| putative Type I secretion membr...   177   6e-46

>gi|134095130|ref|YP_001100205.1| putative Type I secretion membrane
           fusion protein, HlyD [Herminiimonas arsenicoxydans]
          Length = 456

 Score =  177 bits (450), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 123/406 (30%), Positives = 209/406 (51%), Gaps = 55/406 (13%)

Query: 34  LVWAAVSPIDQVTRAQGQVIAVSRTQSVQAPDGGPVKQILVKEGEAVKQGQLLMVLEQDR 93
           ++WA  +PID V R QG+++     Q +Q  +GG V  I+V+EG AV++ Q+L+ +   R
Sbjct: 56  VIWAYFAPIDMVVRGQGRIVPSDHNQIIQHLEGGIVSAIVVREGAAVRKEQVLITIRDVR 115

Query: 94  VQTSLNDSRAKVAALRISLARLRAEVYGQP-LVFDPDLL--------------------- 131
             +   + R K+  LR  +ARL AE  G   L    D+L                     
Sbjct: 116 ASSDQGEGRIKLLGLRARVARLTAEASGAAQLNLPADMLADLTGQSEQAAFAARQAKLNG 175

Query: 132 --------------DYKEYISNQKDLYVKRKTLIDQDLQALNDM-LGLASQELEMNRNLE 176
                         +  E IS QK L      L+ Q  Q ++ M L  A+ +LE  +   
Sbjct: 176 ELSILREQMTQRQAELNETISRQKSL-TDEYALVQQQYQLVHAMYLKSAASQLEDIQAQS 234

Query: 177 KTGDV------GRADVLRLQRNVADIRAQINNKRNKYFQEALVDMTKVQEDLNTQREQLE 230
           +  DV        + + RL+  +++ +A++ +  +++  EA  D+T  + +L    E+++
Sbjct: 235 RAQDVRSRLNAASSMIPRLRAAISEAQAKVTDGVSRFRAEARADLTTAETELARLSEEMK 294

Query: 231 DRSQVLEHTELKAPADGVVKNIRVTTIGGVVRPGDVVMEILPVDN-LIVEVKVSTADSAY 289
            R+  +  +E+KAP DGVV  I V T+GGVV+PGD ++E+ P+D+ ++VE  ++  D A 
Sbjct: 295 SRNDRVLRSEVKAPMDGVVNRIFVNTVGGVVKPGDPILEMTPIDDKVVVEANINPTDRAE 354

Query: 290 VKVGQQANVKLDAYDYSIYGTLNGHVVYVSPDTLLDETRQGAVPYYRVHIAL----EEAV 345
           + +G+ A VK+ AYDY ++G++ G V  +S DT+ +E  +    +YRV I +    E+  
Sbjct: 355 LAIGKPARVKVTAYDYGVFGSMQGRVTEISADTVPEERGER---HYRVKIEVTRDPEQIK 411

Query: 346 FKGEKSSAIHVKPGMTATVEIKANTRTVLSFLVKPIAKTLQESMGE 391
             G   + + + PGMTAT +I    RTV  +L+ PI +  Q ++ E
Sbjct: 412 SAG---NGLPLMPGMTATADIVVGRRTVWQYLMSPINRFTQTALRE 454


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.132    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 598,695
Number of extensions: 21500
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 308
Effective length of database: 723,567
Effective search space: 222858636
Effective search space used: 222858636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)