BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3011.p
         (541 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095129|ref|YP_001100204.1| hypothetical protein HEAR1930 [...    72   5e-14

>gi|134095129|ref|YP_001100204.1| hypothetical protein HEAR1930
           [Herminiimonas arsenicoxydans]
          Length = 554

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 4/105 (3%)

Query: 149 NIQRRTTLPQYIANTLIGLGLFGTFLGLIVTLKEVAALIGLFGVAGTEGSDMMAQF---F 205
           +++ R   PQY+   +I LGL GTF+GL+ TL   A LI  FG A ++GSDM A F    
Sbjct: 128 HLEARMEFPQYLTGFMIALGLLGTFIGLLETLVSTADLINGFGQA-SQGSDMDASFAHLV 186

Query: 206 QKMSGPLAGMGDAFVASLLGLGGSIVNNVQLLATKKLQRVLCVRA 250
             ++ PLA MG AF AS+ GL GS+   + L+  +   + L V A
Sbjct: 187 ADLNKPLASMGTAFSASMFGLIGSLTLGLTLVCLRGAGKRLVVAA 231


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 904,389
Number of extensions: 32770
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 455
Effective length of database: 716,977
Effective search space: 326224535
Effective search space used: 326224535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)