BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3000.p (459 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094028|ref|YP_001099103.1| bifunctional transcriptional re... 307 5e-85 gi|134095984|ref|YP_001101059.1| transcription regulator GntR [H... 119 3e-28 gi|134093921|ref|YP_001098996.1| MocR family transcriptional reg... 112 3e-26 gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herm... 103 2e-23 >gi|134094028|ref|YP_001099103.1| bifunctional transcriptional regulator/amino transferase [Herminiimonas arsenicoxydans] Length = 486 Score = 307 bits (787), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 174/451 (38%), Positives = 263/451 (58%), Gaps = 16/451 (3%) Query: 4 TLTQTLVQSIRRQIADGAYPPGSRLPSIRVLASQHGCAKNTIVNVFEELTAQGVVEPRRG 63 +L +VQ + +I D G+R+PSIR + QH ++ T+V ++ L A G++E RRG Sbjct: 30 SLIAQIVQLVTARIDDKLLRTGARMPSIRQFSDQHKVSRFTVVEAYDRLVAGGLLESRRG 89 Query: 64 AGFFVCATPPR--PKEEEERSLSRAMDVVWLMREQLKHDPGHLRLGDGFPPVEWLHDVRL 121 +GF+V P P+ + + + +DVVWL+R + P G G P EWL + Sbjct: 90 SGFYVRDRTPMLAPRAQRTNTARQPVDVVWLVRNMFRQLPPQKMPGVGLLPNEWLDADLV 149 Query: 122 DKFHQKVVRTGMGALFGYGSRFGYLPLRQHLVHKLAQHGIEAATSQLVLTHGANQALDIV 181 + V R + YG+ G+LPLRQ L KLA+ I A Q V T G QALD+V Sbjct: 150 ANALRAVSRQNLP--LQYGNPQGFLPLRQQLQLKLAELEISATPDQFVTTLGVTQALDLV 207 Query: 182 IRHFVRPCDRVLVDEPGYYMLYGKLKLSGARIVGIPRQADGPDIEALERELKASGKPPLF 241 RH+++P D + VD+P +++++G + GA++VGIPR DGPDI L EL A +P LF Sbjct: 208 ARHYIQPGDTIFVDDPAWFLMFGSFAMLGAKVVGIPRLPDGPDIAQLA-ELAALHRPKLF 266 Query: 242 FTQSLAHNPTASDTSPHKAHKILQLADRYDALIVENDAFADFKPAT----APRIATLDQL 297 S+ HNPT++ S KA ++L++A++YD +IVE+D + D P T A RIA LDQL Sbjct: 267 VINSVLHNPTSTSLSAAKAFQVLKIAEQYDFMIVEDDIYCDMHPGTTVQPATRIAALDQL 326 Query: 298 RRTLYLGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHVSSSEYCERTLDVILSDGHF 357 R +YLG FSK+++A LRVGFIA ++A L D KML ++++E ER + ILS+GH+ Sbjct: 327 NRVIYLGGFSKTLAANLRVGFIATSPEIAKHLCDRKMLTTLTTTEITERVVYRILSEGHY 386 Query: 358 SRHTARLRERLAQATDAACHQLQQLGAELFCAPQQSMYLWARFPGFADAKQLAQALMAHH 417 +H RLR +L D Q++++G ++ + M++W D+ L + M Sbjct: 387 RKHADRLRNKLDAVRDKTVRQMERIGIKINISTPAGMFVWTDV--GCDSNALTERAMEQG 444 Query: 418 VVLAPGSIFHVETEQKVPWS--RFNVGLLAD 446 +LAPGS+F + ++P + RFNV +AD Sbjct: 445 YLLAPGSLF---SPNQLPSTNMRFNVAAMAD 472 >gi|134095984|ref|YP_001101059.1| transcription regulator GntR [Herminiimonas arsenicoxydans] Length = 470 Score = 119 bits (298), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 124/476 (26%), Positives = 208/476 (43%), Gaps = 39/476 (8%) Query: 5 LTQTLVQSIRRQIADGAYPPGSRLPSIRVLASQHGCAKNTIVNVFEELTAQGVVEPRRGA 64 L +TL I I +G G RLPS+R ++ + +T+ + L A+G++ R + Sbjct: 3 LYETLAADIALSIQEGVLRLGDRLPSVRQASASRDVSPSTVFQAYYLLEARGLIRARERS 62 Query: 65 GFFVCAT----PPRPKEEEERSL-SRAMDVVWLMREQLKHDPGH--LRLGDGFPPVEWLH 117 G++V PP P++ + S +D+ L+ E L+ + LG FP Sbjct: 63 GYYVVGDVRKLPPEPEQASQPDEDSSPVDISELVFEVLESSKMRDVVPLGSAFPSPLLFP 122 Query: 118 DVRLDKFHQKVVRTGMGALFGYGSRFGYLP----LRQHLVHKLAQHGIEAATSQLVLTHG 173 RL K + + + L + + P LR+ + + G+ ++V+T+G Sbjct: 123 LARL----AKAMASSVQQLDPWSTVDDLTPGNPQLRRQIALRYRADGLHVQPDEIVITNG 178 Query: 174 ANQALDIVIRHFVRPCDRVLVDEPGYYMLYGKLKLSGARIVGIPRQA-DGPDIEALEREL 232 A AL++ + RP D VLV+ P +Y L+ +G + + +P +G D+ AL R L Sbjct: 179 ALDALNLCLIAVTRPGDAVLVESPTFYAALQSLERNGLQAIEVPTHPREGMDLAALARVL 238 Query: 233 KASGKPPLFFTQSLAHNPTASDTSPHKAHKILQLADRYDALIVENDA-----FADFKPAT 287 + +P + + NP S K ++ L ++D ++E+D F D +PA Sbjct: 239 ERH-QPKACWLMTNFQNPLGSLMPDEKKRDLVALLSQHDIPLIEDDVYGELYFGDKRPAP 297 Query: 288 APRIATLDQLRRTLYLGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHVSSSEYCERT 347 A D ++ SFSK ++ RVG+ A R +A K+ +++S + Sbjct: 298 A---KAYDTKGLVMHCSSFSKCLAPGYRVGWAAPGR-YTRAVARHKLTTTLAASAPAQAA 353 Query: 348 LDVILSDGHFSRHTARLRERLA-QATDAACHQLQQLGAELF------CAPQQSMYLWARF 400 L L G + RH +LR LA Q T Q + A F P+ +LW Sbjct: 354 LATYLEKGGYDRHLRQLRHTLALQQT-----QFMEAIARYFPPGTQATRPRGGYFLWVEL 408 Query: 401 PGFADAKQLAQALMAHHVVLAPGSIFHVETEQKVPWSRFNVGLLADTRFAAAMAEL 456 P +A L + ++H + +APG IF + R N G D R AA+A L Sbjct: 409 PHAVNALTLHRQALSHGISIAPGPIFSAH-QGFTNCIRLNYGHAWDARTEAALATL 463 >gi|134093921|ref|YP_001098996.1| MocR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 469 Score = 112 bits (281), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 105/430 (24%), Positives = 199/430 (46%), Gaps = 25/430 (5%) Query: 4 TLTQTLVQSIRRQIADGAYPPGSRLPSIRVLASQHGCAKNTIVNVFEELTAQGVVEPRRG 63 +L++ + SI R I G PG+RLPS + LA+Q G A+ T+ +E L+ ++E Sbjct: 16 SLSEQICVSICRAIESGLLAPGTRLPSWQGLAAQLGVARGTVQAAYERLSDSQMIETFGA 75 Query: 64 AGFFVC----ATPPRPKEEEERSLSRAMDVVWLMREQLKHDPGHLRLGDGFPPVEWLHDV 119 G V T +P+ + + + +++ P +LG P +E D Sbjct: 76 KGTRVAPRLHTTAGKPEAPQPGAFMKTY-------QEMMAGPAIFQLG--IPAMEGFPDK 126 Query: 120 RLDKFHQ-KVVRTGMGALFGYGSRFGYLPLRQHLVHKLA-QHGIEAATSQLVLTHGANQA 177 + +++TG + Y G + LR+ + L+ + Q+ +T G + Sbjct: 127 LFARARSSNLLKTGSFSSLVYPDPRGEIELRKEVAGYLSISRNLHCFPEQVFITSGYSSG 186 Query: 178 LDIVIRHFVRPCDRVLVDEPGYYMLYGKLKLSGARIVGIPRQADGPDIEALERELKASGK 237 L +V+R +V ++EPG+ + L+L+ IV +P A+G D++ +K + Sbjct: 187 LGLVLRVLGLDGRKVWMEEPGFLLTRKGLELARLNIVPVPVDAEGLDVD---YGIKNAAD 243 Query: 238 PPLFFTQSLAHNPTASDTSPHKAHKILQLADRYDALIVENDAFADFK--PATAPRIATLD 295 L P + S + ++L+ A +A I+E+D ++ + AP +A+LD Sbjct: 244 AALAVVTPGQQAPLGTTLSLRRRLQLLEWAAANNAWIIEDDYLSELQLEGRPAPALASLD 303 Query: 296 QLRRTLYLGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHVSSSEYCERTLDVILSDG 355 + +R +++GSFSK++S LR+GF+ +LA ++I + + S + + DG Sbjct: 304 EGKRVIHIGSFSKTISPGLRLGFVVVPVELAEAFSEIVATLAPAPSPVIQLATAQFMHDG 363 Query: 356 HFSRHTARLRERLAQATDAACHQLQQLGAELFCAPQQSMYLWARFPGFADAKQLAQALMA 415 H+ + RL+ + +D C QL+ AE A + + R P A Q+ + A Sbjct: 364 HYIQRVRRLKRLYSAQSDGLCEQLRMRDAEWIKA---GLAVLLRLPAGAPDVQIVRE--A 418 Query: 416 HHVVLAPGSI 425 ++ +AP + Sbjct: 419 RNIGIAPSPL 428 >gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herminiimonas arsenicoxydans] Length = 397 Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/353 (22%), Positives = 142/353 (40%), Gaps = 20/353 (5%) Query: 92 LMREQLK--HDPGHLRLGDGFPPVEWLHDVRLDKFHQKVVRTGMGALFGYGSRFGYLPLR 149 ++RE LK P + G P E + V+ YG GY PLR Sbjct: 24 VIREILKITMRPDIISFAGGLPSPETFPVEHMKAAFDTVLSQQGKIALQYGPSDGYAPLR 83 Query: 150 QHLVHKLAQHGIEAATSQLVLTHGANQALDIVIRHFVRPCDRVLVDEPGYYMLYGKLKLS 209 + + L+ G+ Q+++ G+ QALD++ + + +VLV+ P Y + Sbjct: 84 EWIADSLSIPGVTITPDQVLMVSGSQQALDLLGKVLIEEHSKVLVETPSYLGALQAFSVY 143 Query: 210 GARIVGIPRQADGPDIEALEREL-KASGKPPLFFTQSLAHNPTASDTSPHKAHKILQLAD 268 V IP D L E+ K + L + NPT S + +++ Sbjct: 144 QPEFVSIPTD----DFGLLPEEVAKIADGARLLYALPNFQNPTGRTMSVERRFALVETCA 199 Query: 269 RYDALIVENDAFA--DFKPATAPRIATLDQLRRTLYLGSFSKSVSAALRVGFIACHRDLA 326 R ++E+D + ++ P++ T++ +YLGSFSK ++ +R+G++ L Sbjct: 200 RLGLPLIEDDPYGALSYRGEPLPKMLTMNP-NGVIYLGSFSKVLTPGIRLGYVVAPVPLV 258 Query: 327 SDLADIKMLVHVSSSEYCERTLDVILSDGHFSRHTARLRERLAQATDAACHQLQQLGAEL 386 L K + +S+ + + + DG +H +R A C + E Sbjct: 259 RKLEQAKQAADLHTSQLTQMVVYEAIKDGFLEKHIPSIRTLYAN----QCQVMLDALTEF 314 Query: 387 FCA------PQQSMYLWARFPGFADAKQLAQALMAHHVVLAPGSIFHVETEQK 433 F A P+ M++W P D +L + + +V PG+ F+ QK Sbjct: 315 FPAGVTWNKPEGGMFIWVTLPEHIDCMKLLEESITQNVAFVPGAPFYANEPQK 367 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 896,792 Number of extensions: 37788 Number of successful extensions: 122 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 110 Number of HSP's successfully gapped: 4 Length of query: 459 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 374 Effective length of database: 720,272 Effective search space: 269381728 Effective search space used: 269381728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)