BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2999.p (536 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 499 e-142 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 487 e-139 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 473 e-135 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 398 e-112 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 384 e-108 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 499 bits (1284), Expect = e-142, Method: Compositional matrix adjust. Identities = 293/525 (55%), Positives = 375/525 (71%), Gaps = 3/525 (0%) Query: 6 NMNIGKRLTLGFAVILAFSAVVAAISLWRLEQVASSTREMMNAPLKTERLVADWYTNVNA 65 N+ IG RL + F ++L A + + + RL+ VA +T M A +K ERL W + Sbjct: 5 NLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIK-ERLAQQWIKGIET 63 Query: 66 GIARTLAIAKSADASLGPYFSKDVTASSKMSSEYQKQIQTLLSTPEEKALFDKIGEQRKI 125 RT A +++D ++++A S S+ Q +++TL+ + E K L + E+R Sbjct: 64 NTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAEKRAT 123 Query: 126 YLSSRDEIIKLKAAGNVEEAMRVLDKVFVPNAAVFQQLMRQLVDIQRKEMDESAMQIDAI 185 Y + RD+++ L+ A E + +K P A + Q + +V+ Q +++ ++D I Sbjct: 124 YTAIRDDVMNLREARGAELQNAIANK-MKPAADAYIQSVEAVVNAQINNFEDAKGRVDTI 182 Query: 186 SAQSHIIILVLEGLILLLGIVLARILTLGITKPLQNAVVVSRKVAAGDLSASVQVHSQDE 245 + ++++VL + L LGIVLA +LT ITKPL AV V+R VA+GDL+ + V S+DE Sbjct: 183 YQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRITVDSKDE 242 Query: 246 TGQLLQALKDMNDSLRGIVSNVRSGTDTISTASSEIATGNLDLSSRTEEQAGSLAETASA 305 TGQLLQALKDMNDSL ++ VRSG DTI+TAS++IA+GNLDLSSRTEEQA SL ETAS+ Sbjct: 243 TGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETASS 302 Query: 306 MEQLISTVRQNADNARQASQLAQSASSVAEQGGGVVSRVVDTMGAINASSRKIVDIIGVI 365 ME+L STV+QNADNARQA+QLA +AS VAE+GG VVS+VVDTM IN S+RKIVDIIGVI Sbjct: 303 MEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGVI 362 Query: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELIHDSVAKV 425 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LI DSV KV Sbjct: 363 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKV 422 Query: 426 GDGSRLVEQAGSTMQEVVSSVRHVTDIVAEISAASAEQTNGIEQINLAITQMDQVTQQNA 485 GS+LV +AG+TM EVV SV+ VTDI+AEI AAS EQ+ GIEQ+N AI QMDQVTQQNA Sbjct: 423 DTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNA 482 Query: 486 ALVEQAAAAAASMQDQAGRLAQMVSIFRLHEGEALAQREIDVTPV 530 ALVE+AAAAA S+ +QA LAQ VSIF+L +G A + R PV Sbjct: 483 ALVEEAAAAAESLNEQAANLAQAVSIFKL-DGVANSSRVATRLPV 526 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 487 bits (1253), Expect = e-139, Method: Compositional matrix adjust. Identities = 287/512 (56%), Positives = 375/512 (73%), Gaps = 4/512 (0%) Query: 6 NMNIGKRLTLGFAVILAFSAVVAAISLWRLEQVASSTREMMNAPLKTERLVADWYTNVNA 65 N+ IG RL L FAV+L A + I +WRL++VA +T M A + ERL W+ +A Sbjct: 5 NLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAA-EQERLSIQWHAGNSA 63 Query: 66 GIARTLAIAKSADASLGPYFSKDVTASSKMSSEYQKQIQTLLSTPEEKALFDKIGEQRKI 125 RT A +S + + F ++TA S ++ Q ++++L+ + E K L +G++R + Sbjct: 64 NAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLMSAVGDKRTV 123 Query: 126 YLSSRDEIIKLKAAGNV---EEAMRVLDKVFVPNAAVFQQLMRQLVDIQRKEMDESAMQI 182 Y+ R E+ KLKA G+ EEA +++ P + + ++ +VD Q+ E+ ++ Sbjct: 124 YMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQVTFLEAKTEV 183 Query: 183 DAISAQSHIIILVLEGLILLLGIVLARILTLGITKPLQNAVVVSRKVAAGDLSASVQVHS 242 D + A + +L L + L L +LA +L+ IT+PL+ AV V+R VA GDL ++V+S Sbjct: 184 DNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGDLRNRIEVNS 243 Query: 243 QDETGQLLQALKDMNDSLRGIVSNVRSGTDTISTASSEIATGNLDLSSRTEEQAGSLAET 302 DETGQLLQAL+DMND L VS VR+G +TI+TAS++IA GNLDLSSRTEEQA SL ET Sbjct: 244 SDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTEEQASSLEET 303 Query: 303 ASAMEQLISTVRQNADNARQASQLAQSASSVAEQGGGVVSRVVDTMGAINASSRKIVDII 362 AS+ME+L STV+QNADNARQA+QLA SAS VAE+GG VVS+VVDTM IN+S++KIVDII Sbjct: 304 ASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINSSAKKIVDII 363 Query: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELIHDSV 422 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI DSV Sbjct: 364 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGDSV 423 Query: 423 AKVGDGSRLVEQAGSTMQEVVSSVRHVTDIVAEISAASAEQTNGIEQINLAITQMDQVTQ 482 KV GS+LV +AG TM+EVV+SV+ VTDI++EI AAS EQ+ GIEQ+N AI QMDQVTQ Sbjct: 424 DKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQVTQ 483 Query: 483 QNAALVEQAAAAAASMQDQAGRLAQMVSIFRL 514 QNAALVE+AAAAA S+ +QAG+LA+ VS+F+L Sbjct: 484 QNAALVEEAAAAAESLNEQAGKLAEAVSVFKL 515 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 473 bits (1218), Expect = e-135, Method: Compositional matrix adjust. Identities = 283/523 (54%), Positives = 378/523 (72%), Gaps = 7/523 (1%) Query: 4 LGNMNIGKRLTLGFAVILAFSAVVAAISLWRLEQVASSTREMMNAPLKTERLVADWYTNV 63 + NM IG RL LGF +IL A + A + RLE + ++R +++ L ++ +W Sbjct: 3 IANMKIGTRLGLGFGLILLLVAAMGATGIMRLENINGASRHLVDDSLSMQKSAQNWLLGT 62 Query: 64 NAGIARTLAIAKSADASLGPYFSKDVTASSKMSSEYQKQIQTLLSTPEEKALFDKIGEQR 123 + +RTLA+ K++D +F K +TA SK +E QK I+ +++ +EK LF ++ ++R Sbjct: 63 SVNASRTLALVKASDPESQEFFQKAITAQSKQITEIQKSIEDRINSDKEKELFAEVAKKR 122 Query: 124 KIYLSSRDEIIKLKAAGNVEEAMRVLDKVFVPNAAVFQQLMRQLVDIQRKEM---DESAM 180 Y+ R I+ +KA GN+ EA +++D VP + ++ ++ E+ DES + Sbjct: 123 SAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENEVKLADES-I 181 Query: 181 QIDAISAQSHIIILVLEGLILLLGIVLARILTLGITKPLQNAVVVSRKVAAGDLSA-SVQ 239 D +S + +II + + +LLG ++A LT+GIT+PL A+ V+ VA GDL+A S Sbjct: 182 TDDYLSGRMALIIGAV--IAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARSDM 239 Query: 240 VHSQDETGQLLQALKDMNDSLRGIVSNVRSGTDTISTASSEIATGNLDLSSRTEEQAGSL 299 +QDE G LL AL M +L V+ +R GTDTI+TASSEIA+GNLDLSSRTE+QA SL Sbjct: 240 AETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSL 299 Query: 300 AETASAMEQLISTVRQNADNARQASQLAQSASSVAEQGGGVVSRVVDTMGAINASSRKIV 359 ETAS+ME+L STV+QNADN+RQA+QLA +AS+VA +GG VVS+VVDTMGAIN S++KIV Sbjct: 300 EETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIV 359 Query: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELIH 419 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIG 419 Query: 420 DSVAKVGDGSRLVEQAGSTMQEVVSSVRHVTDIVAEISAASAEQTNGIEQINLAITQMDQ 479 DSV KV GS+LV +AG+TM E+V V+ V DI+AEI+AAS EQ++GIEQ+N A++QMDQ Sbjct: 420 DSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQ 479 Query: 480 VTQQNAALVEQAAAAAASMQDQAGRLAQMVSIFRLHEGEALAQ 522 VTQQNAALVE+AAAAA S+QDQA LA+ VS+FR+ G A AQ Sbjct: 480 VTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRVGSGYATAQ 522 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 398 bits (1023), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/435 (57%), Positives = 313/435 (71%), Gaps = 18/435 (4%) Query: 94 KMSSEYQKQIQTLLS---TPEEKALFDKIGEQRKIYL-SSRDEIIKLKAAGNVEEAMRVL 149 K S E + ++ TPE K L DK RKI+L + I GNV +RV Sbjct: 88 KHSKEINQAFDAFMASTLTPEAKVLADKFAADRKIFLEKALQPAIAASRGGNV---LRVT 144 Query: 150 DKVFVPNAAVFQQL---MRQLVDIQRKEMDESAMQIDAISAQSHIIILVLEGLILLLGIV 206 + V P + + + L+D++ +E ++ + S +++ + ++ G++ Sbjct: 145 EIVNGPMEELITPVRAGVAALIDLELREAKKAFEE----SQTRFVMVRNISIGAIIFGVL 200 Query: 207 LARILTLG----ITKPLQNAVVVSRKVAAGDLSASVQVHSQDETGQLLQALKDMNDSLRG 262 LA + I +PL +AV ++R VAAGDL+ + V+S +ETGQLLQALKDMNDSL Sbjct: 201 LAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVNSTNETGQLLQALKDMNDSLSK 260 Query: 263 IVSNVRSGTDTISTASSEIATGNLDLSSRTEEQAGSLAETASAMEQLISTVRQNADNARQ 322 VS VR GT+TI+ AS EIA+GN DLSSRTE QAGSL ETAS+ME+L STVRQNADNARQ Sbjct: 261 TVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASSMEELTSTVRQNADNARQ 320 Query: 323 ASQLAQSASSVAEQGGGVVSRVVDTMGAINASSRKIVDIIGVIDGIAFQTNILALNAAVE 382 A+QL SA+ VA +GG VVS VV TMG+I SSRKIVDIIGVID IAFQTNILALNAAVE Sbjct: 321 ANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIAFQTNILALNAAVE 380 Query: 383 AARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELIHDSVAKVGDGSRLVEQAGSTMQEV 442 AARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LI DSV KV GS+LV+QAGSTMQE+ Sbjct: 381 AARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGSKLVDQAGSTMQEI 440 Query: 443 VSSVRHVTDIVAEISAASAEQTNGIEQINLAITQMDQVTQQNAALVEQAAAAAASMQDQA 502 V+SV+HV DI++EI++AS EQ++GIEQ+N AI+QMD++TQQNAALVEQAAAAA SMQDQA Sbjct: 441 VTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVEQAAAAAQSMQDQA 500 Query: 503 GRLAQMVSIFRLHEG 517 L+ V+IF+L G Sbjct: 501 VELSGAVAIFKLDAG 515 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 384 bits (986), Expect = e-108, Method: Compositional matrix adjust. Identities = 237/424 (55%), Positives = 310/424 (73%), Gaps = 11/424 (2%) Query: 98 EYQKQIQTLLSTPEEKALFDKIGEQRKIYLSSRDE-IIKLKAAGNVEEAMRVLDKVFVPN 156 E++K + + T EE+ + D++ +R YL ++ +I AG EE +L P Sbjct: 97 EWKKYLSLPIETLEERKVADEVTAKRIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPP- 155 Query: 157 AAVFQQLMR---QLVDIQRKEMDESAMQIDAISAQSHIIILVLEGLIL-LLGI-VLARIL 211 +FQ L + +LV++Q K + Q D+ + + I+ + G++L L+G+ + A L Sbjct: 156 --LFQSLTKSTDELVELQMKSA-ATGYQ-DSQTLFHYFRIIAVVGVLLGLIGVAIYAFFL 211 Query: 212 TLGITKPLQNAVVVSRKVAAGDLSASVQVHSQDETGQLLQALKDMNDSLRGIVSNVRSGT 271 IT PL+ ++ +A+GDL+++++V S++E G L+ L+ M L V+ VR G+ Sbjct: 212 IRAITGPLKEMLLHFDTIASGDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGS 271 Query: 272 DTISTASSEIATGNLDLSSRTEEQAGSLAETASAMEQLISTVRQNADNARQASQLAQSAS 331 ISTA++EIA GNLDLSSRTE+QA SL ETAS+ME+L STV+QN DNARQA+QLA SAS Sbjct: 272 MAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSAS 331 Query: 332 SVAEQGGGVVSRVVDTMGAINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGR 391 +VA +GG VVS VV+TM AIN S+RKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGR Sbjct: 332 AVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGR 391 Query: 392 GFAVVASEVRSLAQRSASAAKEIKELIHDSVAKVGDGSRLVEQAGSTMQEVVSSVRHVTD 451 GFAVVASEVRSLAQRSA+AAKEIK LI DSV KV G+RLV +AG+TM EVV SV+ VTD Sbjct: 392 GFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTD 451 Query: 452 IVAEISAASAEQTNGIEQINLAITQMDQVTQQNAALVEQAAAAAASMQDQAGRLAQMVSI 511 I++EI AAS EQ+ GIEQ+N AI QMD+VTQQNAALVEQAAAAA+S++DQA L+ +VS+ Sbjct: 452 IMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSV 511 Query: 512 FRLH 515 F+L Sbjct: 512 FKLQ 515 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.126 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 657,648 Number of extensions: 19704 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 15 Length of query: 536 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 450 Effective length of database: 716,977 Effective search space: 322639650 Effective search space used: 322639650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)