BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2997.p
         (528 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094895|ref|YP_001099970.1| malate synthase [Herminiimonas ...   887   0.0  

>gi|134094895|ref|YP_001099970.1| malate synthase [Herminiimonas
           arsenicoxydans]
          Length = 532

 Score =  887 bits (2291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/532 (79%), Positives = 465/532 (87%), Gaps = 4/532 (0%)

Query: 1   MTQLK--LPTGMEISGEIKPGYENVLTFEALSLVAKLSRAFEGRRQELLAARAERVKRLD 58
           MT+L   LP G+EI GE K  YE +LT  AL+LVAKLSRAFE RRQELL  R+ R KR+D
Sbjct: 1   MTELTIDLPAGIEIDGEFKADYERILTPAALALVAKLSRAFEARRQELLHMRSARAKRID 60

Query: 59  AGERPDFLKETESIRTGDWKIAPIPEALKCRRVEITGPVERKMVINAFNSGADSYMTDFE 118
           AGE  DFL ET  IR GDW+IAPIP AL+CRRVEITGPV+RKMVINAFNSGAD YM DFE
Sbjct: 61  AGELLDFLPETAHIRAGDWRIAPIPAALECRRVEITGPVDRKMVINAFNSGADIYMADFE 120

Query: 119 DSNSPVWDNQISGQINLYDAIRRTISLESNGKSYKLNDKIATLVVRPRGWHLDEKHVTLD 178
           D+N+P WDNQISGQINL DA+R+TISL++NGK Y+LNDKIATL+VRPRGWHLDEKH+ +D
Sbjct: 121 DANTPNWDNQISGQINLIDAVRKTISLDTNGKHYQLNDKIATLMVRPRGWHLDEKHMLVD 180

Query: 179 GKRISGGIFDFALFLFHNAKEQLARGAGPYFYLPKMESHLEARLWNDIFVMAQNEIGLPQ 238
           GKR+SGGIFDFALF+FHNA E L RGAGPYFYLPKMESHLEARLWND+F+M Q E+GLPQ
Sbjct: 181 GKRVSGGIFDFALFMFHNAHELLKRGAGPYFYLPKMESHLEARLWNDVFIMTQQELGLPQ 240

Query: 239 GTIKATVLIETITAAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFKNDKDFCLADRAK 298
           GTIKATVLIETI AAFEM+EILYELREHSAGLNAGRWDYIFSCIK FK DK+FCLADRAK
Sbjct: 241 GTIKATVLIETILAAFEMDEILYELREHSAGLNAGRWDYIFSCIKTFKLDKNFCLADRAK 300

Query: 299 VTMTAPFMRAYALLLLKTCHKRGAPAIGGMSALIPIKNDPEKNAIAMQGIINDKRRDATD 358
           VTMT PFMR+YALLLLKTCH+RGA A+GGM+ALIPIKND  KN IAM  +  DK RDA D
Sbjct: 301 VTMTVPFMRSYALLLLKTCHRRGAHAMGGMAALIPIKNDSVKNEIAMNAVRIDKERDAID 360

Query: 359 GYDGGWVAHPGLVEASMKEFVAVLGDKPNQFEKQRPDVDVKAADLLNFQPETPITEAGLR 418
           GYDGGWVAHPGLVE +M EF  VLGDKPNQ EK RPDV   AADLLNFQPETPITEAGLR
Sbjct: 361 GYDGGWVAHPGLVELAMTEFKKVLGDKPNQIEKLRPDVTATAADLLNFQPETPITEAGLR 420

Query: 419 YNINVGIHYLGAWLAGNGCVPIHNLMEDAATAEISRAQVWQWIRSAKGKLEDGRKVTADM 478
           YNINVGIHYLG+WL GNGCVPIHNLMEDAATAEISR+QVWQWI S+KG LEDGRK+T  M
Sbjct: 421 YNINVGIHYLGSWLDGNGCVPIHNLMEDAATAEISRSQVWQWIHSSKGVLEDGRKITVAM 480

Query: 479 VRAMIPEELAKVKQVAGEG--PTYDRAAKIFEEMSTSETFAEFLTLPLYEEI 528
           VRAMIPEELAKVKQ A  G  P+Y+RAAKIFEEMST+++FAEFLTLPLYEEI
Sbjct: 481 VRAMIPEELAKVKQQAPNGLSPSYERAAKIFEEMSTAQSFAEFLTLPLYEEI 532


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 985,300
Number of extensions: 40369
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 442
Effective length of database: 716,977
Effective search space: 316903834
Effective search space used: 316903834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)