BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2996.p
         (68 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094972|ref|YP_001100047.1| RNA chaperone [Herminiimonas ar...   126   3e-31
gi|134095623|ref|YP_001100698.1| RNA chaperone [Herminiimonas ar...   118   5e-29
gi|134095543|ref|YP_001100618.1| cold shock DNA -binding domain-...   113   2e-27

>gi|134094972|ref|YP_001100047.1| RNA chaperone [Herminiimonas
          arsenicoxydans]
          Length = 67

 Score =  126 bits (316), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/66 (90%), Positives = 63/66 (95%)

Query: 1  MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATG VKWFND+KGFGFITPDEGGEDLFAHFSAIQS+GFKSL+ENQRVSFEVT GPKGKQ
Sbjct: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSSGFKSLQENQRVSFEVTAGPKGKQ 60

Query: 61 ASNIVP 66
          ASNI P
Sbjct: 61 ASNIQP 66


>gi|134095623|ref|YP_001100698.1| RNA chaperone [Herminiimonas
          arsenicoxydans]
          Length = 67

 Score =  118 bits (296), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 56/64 (87%), Positives = 60/64 (93%)

Query: 1  MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATGTVKWFND+KGFGFITPD+GGEDLFAHFSAIQ NGFK+LKE Q+V FEVT GPKGKQ
Sbjct: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGPKGKQ 60

Query: 61 ASNI 64
          ASNI
Sbjct: 61 ASNI 64


>gi|134095543|ref|YP_001100618.1| cold shock DNA -binding
          domain-containing protein [Herminiimonas
          arsenicoxydans]
          Length = 67

 Score =  113 bits (282), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/67 (82%), Positives = 58/67 (86%)

Query: 1  MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          M TGTVKWFND+KGFGFITPD GGEDLFAHFSAI   GFK+LKE Q+VSFEVT GPKGKQ
Sbjct: 1  MQTGTVKWFNDSKGFGFITPDSGGEDLFAHFSAITMEGFKTLKEGQKVSFEVTQGPKGKQ 60

Query: 61 ASNIVPA 67
          ASNI  A
Sbjct: 61 ASNIKNA 67


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 136,487
Number of extensions: 4096
Number of successful extensions: 7
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 3
Length of query: 68
Length of database: 1,000,347
Length adjustment: 39
Effective length of query: 29
Effective length of database: 871,842
Effective search space: 25283418
Effective search space used: 25283418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 121 (51.2 bits)