BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2994.p
         (221 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095111|ref|YP_001100186.1| 4-diphosphocytidyl-2C-methyl-D-...   248   3e-67

>gi|134095111|ref|YP_001100186.1|
           4-diphosphocytidyl-2C-methyl-D-erythritol synthase
           [Herminiimonas arsenicoxydans]
          Length = 232

 Score =  248 bits (632), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 129/220 (58%), Positives = 159/220 (72%), Gaps = 10/220 (4%)

Query: 1   MGGQIPKQYMMLAGQPMLQHALQTFATHARIAHTFVVVSAEDGWIDTLMT--PALQARVS 58
           +GG  PKQY+ +AG+ ML+H L TF+    I+HTFVVVSAEDG+I+ +M   P   A ++
Sbjct: 19  IGGSTPKQYVSIAGKAMLRHVLDTFSDTVAISHTFVVVSAEDGYINDIMAEPPDHHAGIT 78

Query: 59  ILRVGGPTRQDSVFNGLNAMRAEAGDADWVLVHDAARPGLDAALIDRLLDALEGDEVGGL 118
           +LRVGGPTRQ SV NGL+A R   GD DWVLVHDAARPGL+ +L+D+L+  L+ DEVGGL
Sbjct: 79  VLRVGGPTRQLSVLNGLHAAREWIGDDDWVLVHDAARPGLNDSLVDKLIQTLKDDEVGGL 138

Query: 119 LALPMVDTLKRSDAQCPARSLETVPRAGLWAAQTPQMFPYTLLQRALHQAQQQGRLGEIT 178
           LA+P+VDTLKR D     R   TV R  LWAAQTPQMFPY LL++AL QA        +T
Sbjct: 139 LAVPVVDTLKRMDES--GRVENTVAREHLWAAQTPQMFPYGLLKKALEQA------AAVT 190

Query: 179 DDASAIEMLGLRPRLVEGSPRNLKVTLAQDAALAEFFLKG 218
           D+A AIE LGL+P+LV G   N KVTL +D ALAE +LKG
Sbjct: 191 DEAGAIEALGLKPKLVTGHACNFKVTLPEDVALAELYLKG 230


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 378,068
Number of extensions: 12509
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 143
Effective length of database: 743,337
Effective search space: 106297191
Effective search space used: 106297191
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)