BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2992.p
         (294 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095114|ref|YP_001100189.1| putative phosphoserine phosphat...   395   e-111

>gi|134095114|ref|YP_001100189.1| putative phosphoserine phosphatase
           protein [Herminiimonas arsenicoxydans]
          Length = 281

 Score =  395 bits (1015), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/288 (71%), Positives = 228/288 (79%), Gaps = 8/288 (2%)

Query: 7   MNLILQAPKQHTVSSSAIDAIAALAGGRAERLADERVPDVDAWRVAGVRGDDALKASIDA 66
           MNLILQ      V    ++ IA LA  R      E      A+R   V  +D +K+ ID 
Sbjct: 1   MNLILQGL---NVQRHIVEQIAGLARPRTIVAIGEH-----AYRCIDVSYNDEVKSQIDM 52

Query: 67  ACLQARLDYAFIEEGRKLSDFRLLAMDMDSTLITIECIDEIADMQGLKPQVAEITEAAMR 126
           A   A+LDYAFIE  R LSDF+LL MDMDSTLITIECIDEIADMQGLKPQVAEITEAAMR
Sbjct: 53  AAWAAQLDYAFIERSRSLSDFKLLVMDMDSTLITIECIDEIADMQGLKPQVAEITEAAMR 112

Query: 127 GEIEFNESLTRRVALLQGLDAGALQRVYDERLQLSLGAENMLKAVQAAGLKTLLVSGGFT 186
           GEIEF ESLTRRVALL+GLDAGALQRVYDERL LS GAE ML A+QAAG+KTLLVSGGFT
Sbjct: 113 GEIEFKESLTRRVALLKGLDAGALQRVYDERLALSPGAEKMLAAIQAAGMKTLLVSGGFT 172

Query: 187 FFTDRMKARLGLDYTHANTLEVVDGKLTGKVVGGIVNADEKRATVERVCREISAEPAQAI 246
           FFTDRMK RL LDYTH+N LE+VDGKL+G+V+GGIV+  EK+ATVERVC+E+   P Q I
Sbjct: 173 FFTDRMKQRLQLDYTHSNELEIVDGKLSGRVMGGIVDGAEKKATVERVCKELDIAPRQTI 232

Query: 247 VMGDGANDLRMMGISGLSVAFRAKPVVRAQASVGLNFVGLDGILNLLA 294
           VMGDGANDLRMMGI+GLSVAFRAKPVVRAQA V LNFVGLDGIL L +
Sbjct: 233 VMGDGANDLRMMGIAGLSVAFRAKPVVRAQADVALNFVGLDGILQLFS 280


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 447,865
Number of extensions: 16025
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 213
Effective length of database: 733,452
Effective search space: 156225276
Effective search space used: 156225276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)