BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2990.p (541 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 150 2e-37 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 132 4e-32 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 125 7e-30 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 122 5e-29 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 120 2e-28 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 141/543 (25%), Positives = 259/543 (47%), Gaps = 38/543 (6%) Query: 1 MKNWTIKQRLLGSFGLILLLMALMAGISALNLGRIDKSATALRRDSTPGLYHSTQINAAW 60 KN I RL +FGL+L+LMA M + L L + K AT L ++T + Q Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAK-ATVLMEEATIKERLAQQWIKGI 61 Query: 61 YENLLLTQQIAQIDTNDAERQANLAL-LRRNAERLDKLQEDYDQTIFSDTDRNLFEQFKQ 119 N + T A++ T+D E+ L + + + K Q++ + + S + L + Sbjct: 62 ETNTVRT--FARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAE 119 Query: 120 VRQRYRALVGEVLKMDFSQRPPIDKLFNEQIRPQWRAGYQLTQRMVDTNKAIADKAASRI 179 R Y A+ +V+ + ++ + +++P A Q + +V+ + A R+ Sbjct: 120 KRATYTAIRDDVMNLREARGAELQNAIANKMKPAADAYIQSVEAVVNAQINNFEDAKGRV 179 Query: 180 NEAVTAAQFAMMTALMAALLAAMVCGFFLLRAINEPLQKLMGILDVMRSGDFSRRVALDR 239 + +A+ ++ + AL +V + L R+I +PL + + ++ SGD + R+ +D Sbjct: 180 DTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRITVDS 239 Query: 240 NDEFGVLGSGFDRMTDELAALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEI 299 DE G L M D L A ++Q + +AT+ +IA+ + E A++ E Sbjct: 240 KDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEET 299 Query: 300 GATSREIHATSR---DLVRTMNEVSVVSEQTSALAGNGQAGLTRMGETMHNVMDAAGSVS 356 ++ E+ +T + D R N+++V + S +A G ++++ +TM + Sbjct: 300 ASSMEELTSTVKQNADNARQANQLAVTA---SGVAEKGGTVVSKVVDTMDGI-------- 348 Query: 357 AKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLAD 416 N A I ++ I +A QTN+L+LNAA+EA +AGE GRGF+VVA+E+R LA Sbjct: 349 ------NTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQ 402 Query: 417 QTAVATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRAMQDVQTAGSQLSQIIAQVQALAP 476 ++A A +I+ ++ D D+V + V AG+ + +++ V+ + Sbjct: 403 RSAAAAKEIKTLI--------------DDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTD 448 Query: 477 RFQIVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELNVVSNELRNGVSR 536 + Q Q+ EQ+NQA+ Q+ + QQ +++++ A E LN + L VS Sbjct: 449 IMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSI 508 Query: 537 FKV 539 FK+ Sbjct: 509 FKL 511 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 119/424 (28%), Positives = 206/424 (48%), Gaps = 67/424 (15%) Query: 130 EVLKMDFSQRPPI----DKLFNEQIRPQWRA---GYQLTQRMVDTNKAIADKAASRINEA 182 EV + ++ PP+ K +E + Q ++ GYQ +Q + + IA Sbjct: 144 EVEDILVNKMPPLFQSLTKSTDELVELQMKSAATGYQDSQTLFHYFRIIA---------- 193 Query: 183 VTAAQFAMMTALMAALLAAMVCGFFLLRAINEPLQKLMGILDVMRSGDFSRRVALDRNDE 242 + ++ L+ + FFL+RAI PL++++ D + SGD + + + +E Sbjct: 194 --------VVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSNIEVKSRNE 245 Query: 243 FGVLGSGFDRMTDELAALVSQAQKSSARVATSVTEIAAT-------ARQQQATAAETAAT 295 G L G +M L V+Q ++ S ++T+ TEIAA QQ A+ ETA++ Sbjct: 246 MGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASS 305 Query: 296 TTEIGATSREIHATSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMGETMHNVMDAAGSV 355 E+ +T ++ + D R N+++ SA+A G A ++ + N MDA Sbjct: 306 MEELTSTVKQ----NTDNARQANQLAT---SASAVAVKGGAVVS----DVVNTMDA---- 350 Query: 356 SAKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLA 415 +N A I ++ I +A QTN+L+LNAA+EA +AGE GRGF+VVA+E+R LA Sbjct: 351 ------INTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 404 Query: 416 DQTAVATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRAMQDVQTAGSQLSQIIAQVQALA 475 ++A A +I+ ++ + + V AG + V AG+ +++++ V+ + Sbjct: 405 QRSAAAAKEIKHLIDDSVNKVDAGT--------------RLVAEAGTTMTEVVDSVKRVT 450 Query: 476 PRFQIVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELNVVSNELRNGVS 535 + Q Q+ EQ+N A+VQ+ E QQ ++Q++ A L + L VS Sbjct: 451 DIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVS 510 Query: 536 RFKV 539 FK+ Sbjct: 511 VFKL 514 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 125 bits (313), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 139/546 (25%), Positives = 250/546 (45%), Gaps = 40/546 (7%) Query: 1 MKNWTIKQRLLGSFGLILLLMALMAGISALNLGRIDKSATALRRDSTPGLYHSTQINAAW 60 + N I RL +F ++LLLMA M I L + + AT ++ S Q +A Sbjct: 3 ITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQ-ATVRMEEAAEQERLSIQWHAGN 61 Query: 61 YENLLLTQQIAQIDTNDAERQANLALLRRNAERLDKLQEDYDQTIFSDTDRNLFEQFKQV 120 N + T + + ++Q + ++ E + KLQ + I S+ + L Sbjct: 62 SANAIRTTARIRSTNQEVQQQFQNEMTAQSVE-ITKLQNKLESLIHSEEGKKLMSAVGDK 120 Query: 121 RQRYRALVGEVLKMDFSQRPPID----KLFNEQIRPQWRAGYQLTQRMVDTNKAIADKAA 176 R Y + EV K+ P + K+ ++ P + Q +VD + +A Sbjct: 121 RTVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQVTFLEAK 180 Query: 177 SRINEAVTAAQFAMMTALMAALLAAMVCGFFLLRAINEPLQKLMGILDVMRSGDFSRRVA 236 + ++ + + ++T AL + + + L R+I PL+ + + + GD R+ Sbjct: 181 TEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGDLRNRIE 240 Query: 237 LDRNDEFGVLGSGFDRMTDELAALVSQAQKSSARVATSVTEIAATARQQQATAAETAATT 296 ++ +DE G L M D L VS+ + +AT+ +IAA + E A++ Sbjct: 241 VNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTEEQASSL 300 Query: 297 TEIGATSREIHATSR---DLVRTMNEVSVVSEQTSALAGNGQAGLTRMGETMHNVMDAAG 353 E ++ E+ +T + D R N+++V S +A G ++++ +TM ++ Sbjct: 301 EETASSMEELTSTVKQNADNARQANQLAV---SASGVAEKGGVVVSQVVDTMEDI----- 352 Query: 354 SVSAKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRR 413 N A I ++ I +A QTN+L+LNAA+EA +AGE GRGF+VVA+E+R Sbjct: 353 ---------NSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRN 403 Query: 414 LADQTAVATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRAMQDVQTAGSQLSQIIAQVQA 473 LA ++A A KEI++ + V D+V + V AG + +++ V+ Sbjct: 404 LAQRSAAAA-------KEIKTLIGDSV-------DKVDIGSKLVAEAGVTMEEVVNSVKR 449 Query: 474 LAPRFQIVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELNVVSNELRNG 533 + + Q Q+ EQ+NQA+ Q+ + QQ +++++ A E LN + +L Sbjct: 450 VTDIMSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEA 509 Query: 534 VSRFKV 539 VS FK+ Sbjct: 510 VSVFKL 515 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 146/563 (25%), Positives = 260/563 (46%), Gaps = 76/563 (13%) Query: 1 MKNWTIKQRLLGSFGLILLLMALMAGISALNLGRIDKSATALRRDSTPGLYHSTQINAAW 60 +KN TIK LL G++ LL+ + GI L L +D + ALR +Y + Sbjct: 2 LKNITIKSLLLFVMGILSLLL-IATGI--LGLTSLDTTNKALR-----SVYEDRTVPIGQ 53 Query: 61 YENLLLTQQIAQIDTNDAERQANLALLRRNAERLDKLQEDYDQ-------TIFSDTDRNL 113 ++ I Q+D A + L+ + ++K ++ +Q + + + L Sbjct: 54 LNTVITLSTINQLDLA-ASIYGDPGLVIPKMDAIEKHSKEINQAFDAFMASTLTPEAKVL 112 Query: 114 FEQFKQVRQRY--RAL--------VGEVLKMDFSQRPPIDKLFNEQIRPQWRAGYQLTQR 163 ++F R+ + +AL G VL++ P+++L I P RAG Sbjct: 113 ADKFAADRKIFLEKALQPAIAASRGGNVLRVTEIVNGPMEEL----ITP-VRAGVA---A 164 Query: 164 MVDTNKAIADKAASRINEAVTAAQFAMMTALMAALLAAMVCGFFLLRAINEPLQKLMGIL 223 ++D A KA + + A++ +L A F+L+R I PL + I Sbjct: 165 LIDLELREAKKAFEESQTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIA 224 Query: 224 DVMRSGDFSRRVALDRNDEFGVLGSGFDRMTDELAALVSQAQK-------SSARVATSVT 276 + +GD ++++ ++ +E G L M D L+ VS ++ +S +A+ Sbjct: 225 RSVAAGDLTQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNA 284 Query: 277 EIAATARQQQATAAETAATTTEIGATSREIHATSRDLVRTMNEVSVVSEQTSALAGNGQA 336 ++++ Q + ETA++ E+ +T R+ + D R N++ VVS A+ G Sbjct: 285 DLSSRTEAQAGSLEETASSMEELTSTVRQ----NADNARQANQL-VVSATEVAVKG---- 335 Query: 337 GLTRMGETMHNVMDAAGSVSAKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEK 396 G + V+ GS+ + + I ++ I +A QTN+L+LNAA+EA + Sbjct: 336 -----GSVVSEVVITMGSI-------KDSSRKIVDIIGVIDSIAFQTNILALNAAVEAAR 383 Query: 397 AGEHGRGFSVVATEIRRLADQTAVATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRAMQD 456 AGE GRGF+VVA+E+R LA ++A A +I+ ++ + V AG K DQ Sbjct: 384 AGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAG----SKLVDQ------- 432 Query: 457 VQTAGSQLSQIIAQVQALAPRFQIVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQS 516 AGS + +I+ V+ +A + Q Q++ EQ+NQA+ Q+ E QQ ++Q+ Sbjct: 433 ---AGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVEQA 489 Query: 517 SQAIEELNVVSNELRNGVSRFKV 539 + A + + + EL V+ FK+ Sbjct: 490 AAAAQSMQDQAVELSGAVAIFKL 512 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 120 bits (300), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 117/458 (25%), Positives = 221/458 (48%), Gaps = 44/458 (9%) Query: 91 AERLDKLQEDYDQTIFSDTDRNLFEQFKQVRQRYRALVGEVLKMDFSQR-PPIDKLFNEQ 149 ++++ ++Q+ + I SD ++ LF + + R Y + +L + +++ + + Sbjct: 92 SKQITEIQKSIEDRINSDKEKELFAEVAKKRSAYIDIRKSILGVKAGGNIAEANQMIDTK 151 Query: 150 IRPQWRAGYQLTQRMVDTNKAIADKAASRINEAVTAAQFAMMTALMAALLAAMVCGFFLL 209 + P A + ++ + A I + + + A++ + A+L + + L Sbjct: 152 MVPALDAYVDSVKNVLGHYENEVKLADESITDDYLSGRMALIIGAVIAILLGTLIAWRLT 211 Query: 210 RAINEPLQKLMGILDVMRSGDFSRRVAL-DRNDEFGVLGSGFDRMTDELAALVSQAQKSS 268 I PL + + + + + GD + R + + DE G+L S RM L V+Q + + Sbjct: 212 VGITRPLHEALKVAESVAEGDLTARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGT 271 Query: 269 ARVATSVTEIAAT-------ARQQQATAAETAATTTEIGATSREIHATSRDLVRTMNEVS 321 +AT+ +EIA+ QQ ++ ETA++ E+ +T ++ + D R N+++ Sbjct: 272 DTIATASSEIASGNLDLSSRTEQQASSLEETASSMEELTSTVKQ----NADNSRQANQLA 327 Query: 322 VVSEQTSALAGNGQAGLTRMGETMHNVMDAAGSVSAKLAILNEKAGNINQVVTTITKVAD 381 V + T A+ G G + V+D G++ N A I ++ I +A Sbjct: 328 VAA-STVAVKG---------GAVVSQVVDTMGAI-------NNSAKKIVDIIGVIDGIAF 370 Query: 382 QTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLADQTAVATYDIEVMVKEIQSAVAAGVM 441 QTN+L+LNAA+EA +AGE GRGF+VVATE+R LA ++A A +I+ ++ + V AG Sbjct: 371 QTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVEKVDAG-- 428 Query: 442 GMDKFSDQVRRAMQDVQTAGSQLSQIIAQVQALAPRFQIVNEGMQAQANSAEQINQALVQ 501 K V AG+ + +I+ V+ +A + Q Q++ EQ+NQA+ Q Sbjct: 429 --SKL----------VAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQ 476 Query: 502 LSEAAQQTVESLQQSSQAIEELNVVSNELRNGVSRFKV 539 + + QQ +++++ A E L + L VS F+V Sbjct: 477 MDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRV 514 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.127 0.334 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 703,333 Number of extensions: 22561 Number of successful extensions: 199 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 13 Length of query: 541 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 455 Effective length of database: 716,977 Effective search space: 326224535 Effective search space used: 326224535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)