BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2988.p
         (419 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094528|ref|YP_001099603.1| glutamate methyltransferase [He...    92   7e-20

>gi|134094528|ref|YP_001099603.1| glutamate methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 300

 Score = 91.7 bits (226), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 117/262 (44%), Gaps = 18/262 (6%)

Query: 2   KTLPHIAELLKAAMGLDMATVGSSLIERVVRERMAALEITDDSLYLAVLQTSEAQ---LQ 58
           +    +  L+    G+ +A     ++   +  R+ A  I+    YL  L+    +    +
Sbjct: 27  RDFERVRALIYKKAGIALAESKQEMVYSRLARRLRATGISSFVTYLDRLEQGSGETEEWE 86

Query: 59  ALIESAVVPETWFFRDREAIFATARLARQRLAEQPAVPVRILSLPCSTGEEPYSLAMALQ 118
           A   +     T FFR+    F       +++ E    P+ I     STGEEPYS+AM   
Sbjct: 87  AFTNALTTNLTSFFRESHH-FPILAEHLKKVKE----PIEIWCSAASTGEEPYSIAMTAC 141

Query: 119 E--EGVAPTQFVIDAYDIRTRSLEIAAAGVYGRNSFRGQDLGFRDRHFTPHEQGWQLQQ- 175
           E    + P   +I A DI T  L   A GVY  +         R R F    +G +  Q 
Sbjct: 142 EAFNTLTPPVRII-ATDIDTNVLNTGANGVYSIDRLDKMSPE-RARRFFLRGKGAREGQV 199

Query: 176 ----EIRQQVRFAPGNLLAPDFLRQAAPYDFIFCRNVLIYFEREVQQQVVDLLESLMKPD 231
               E+RQ + F   NLLA D    + P+D IFCRNV+IYF++  Q +++D    LMKPD
Sbjct: 200 RVRPELRQMISFKQVNLLA-DNWGVSGPFDVIFCRNVMIYFDKPTQGKILDRFAPLMKPD 258

Query: 232 ALVFVGPAEGGILLSPRMESAG 253
            L+F G +E  + +    +  G
Sbjct: 259 GLLFAGHSENFLYVCDEFKLRG 280


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 649,567
Number of extensions: 22910
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 335
Effective length of database: 723,567
Effective search space: 242394945
Effective search space used: 242394945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)