BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2984.p (342 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [... 166 2e-42 gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 138 4e-34 gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [... 134 7e-33 gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [... 125 4e-30 gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586 [... 115 3e-27 >gi|134095859|ref|YP_001100934.1| hypothetical protein HEAR2691 [Herminiimonas arsenicoxydans] Length = 280 Score = 166 bits (420), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 140/238 (58%), Gaps = 3/238 (1%) Query: 98 VPIIVLSSRDDPEIKRDAFAGGANDYMVKLPDVIELVARLRYHSRSYINLLQRDAAYRAL 157 V V S+D + + D A + V + DV+ ++ + I + D + R Sbjct: 40 VNFCVAQSKDGTDHEADYRALTKDGNYVWIRDVVHVMRNADGEVEALIGFM-FDISER-- 96 Query: 158 RESQQQLQKTNFELQRLTNTDGLTGIANRRYFDDYLSAEWRRARRDAVPLSLLLIDVDFF 217 ++++ +L EL+ L+ DGLTG+ANRR FD ++AEW A+ + PLS++++D+D+F Sbjct: 97 KKTEAKLIDLQKELETLSFKDGLTGVANRRMFDSIMAAEWANAKLNHQPLSVIMLDIDYF 156 Query: 218 KRYNDNYGHVAGDTVLRRVAQIIDDTIQRPADLAARFGGEEFAMILPRTPIEGAHSLGLK 277 K+YND+YGH+ GD L+RVA I+ +R D ARFGGEEF ++LP T A ++ + Sbjct: 157 KQYNDHYGHIQGDDCLKRVANILSSATRRSRDFFARFGGEEFILVLPETDELNAINIAER 216 Query: 278 LCQCIEANQVPHERSDISAWLTVSIGAACVIPGQEQDISELIEMADRRLYLAKQQGRN 335 I ++PHE+S++ +TVS+G VIP + D IE D+RLY AKQ+GRN Sbjct: 217 CRTLICKEKIPHEKSEVIPMITVSLGVGTVIPTDKDDPIRFIEEVDKRLYQAKQRGRN 274 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 138 bits (347), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 76/188 (40%), Positives = 116/188 (61%), Gaps = 2/188 (1%) Query: 150 RDAAYRALRESQQQLQKTNFELQRLTNTDGLTGIANRRYFDDYLSAEWRRARRDAVPLSL 209 R+ A LR ++ L+++N EL L D LTG+ANRR FD L E+ RA R+ L+L Sbjct: 322 RERAQSELRTARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFARAMRNQTSLAL 381 Query: 210 LLIDVDFFKRYNDNYGHVAGDTVLRRVAQIIDDTIQRPADLAARFGGEEFAMILPRTPIE 269 +++DVD FK+YND YGH GD L+ +++I+ R DL AR+GGEEF ++LP T Sbjct: 382 IMLDVDHFKKYNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVILLPGTDRA 441 Query: 270 GAHSLGLKLCQCIEANQVPHERSDISAWLTVSIGAACVIPGQEQDI-SELIEMADRRLYL 328 GA ++ ++ I+A + H + +T S+G A +IP ++Q+ +L+ AD+ LY Sbjct: 442 GAAAVAERVRLAIQALNMEHAETP-DGIVTASLGIAALIPQRQQNSPQQLVHAADQALYK 500 Query: 329 AKQQGRNR 336 AK+ GRN+ Sbjct: 501 AKEDGRNQ 508 >gi|134095595|ref|YP_001100670.1| hypothetical protein HEAR2418 [Herminiimonas arsenicoxydans] Length = 313 Score = 134 bits (337), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 74/195 (37%), Positives = 110/195 (56%), Gaps = 6/195 (3%) Query: 148 LQRDAAYRA-----LRESQQQLQKTNFELQRLTNTDGLTGIANRRYFDDYLSAEWRRARR 202 +Q+D R LR+ ++ L++ L++L D LTGI +R+YF+D L W + Sbjct: 115 IQKDVTARVVLEQRLRKERRLLERDKENLEQLVVHDTLTGIYSRKYFEDQLRTRWDQLID 174 Query: 203 DAVPLSLLLIDVDFFKRYNDNYGHVAGDTVLRRVAQIIDDTIQRPADLAARFGGEEFAMI 262 L ++ IDVD+FK +ND YGH+AGD LR+VA I+DD+++R ++ ARFGGEEF ++ Sbjct: 175 TQESLVMMFIDVDYFKGFNDTYGHIAGDDALRKVASILDDSLRRDSEFVARFGGEEFIVL 234 Query: 263 LPRTPIEGAHSLGLKLCQCIEANQVPHERSDISAWLTVSIGAACVIPGQEQDISELIEMA 322 E A LC+ + +PH S +LT+S G + P L+E A Sbjct: 235 ATEMTAEQAIMHAENLCRSVRDLDIPHAASP-HQFLTISCGVVRMKPSSMAQPEVLLEQA 293 Query: 323 DRRLYLAKQQGRNRV 337 D LY AK +GRN+V Sbjct: 294 DSALYQAKARGRNQV 308 >gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans] Length = 568 Score = 125 bits (313), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 103/178 (57%), Gaps = 11/178 (6%) Query: 163 QLQKTNFELQRLTNTDGLTGIANRRYFDDYLSAEWRRARRDAVPLSLLLIDVDFFKRYND 222 +LQ+ N L++L TD LTG+ANR + ++ L+ E+ R +R +P +L++DVDFFKR ND Sbjct: 390 ELQELNITLEQLARTDALTGLANRMHTNERLAEEFARFKRSKIPYCILMLDVDFFKRVND 449 Query: 223 NYGHVAGDTVLRRVAQIIDDTIQRPADLAARFGGEEFAMILPRTPIEGAHSLGLKLCQCI 282 YGH GD VL+ VA I+ T+ R D R GGEEF ILP T A + K+ I Sbjct: 450 IYGHGVGDEVLKHVASILSATV-RKTDFVGRHGGEEFLSILPMTDSSAAMVVAEKIRNTI 508 Query: 283 EANQVPHERSDISAWLTVSIGAACVIPGQEQDISE--LIEMADRRLYLAKQQGRNRVV 338 E+ + + LTVSIG V DI+E + AD +Y AK+ GRN+V+ Sbjct: 509 ESTPIGPVGN-----LTVSIGVQEVTV---NDINEDVAVTRADECMYQAKKSGRNKVI 558 >gi|134093839|ref|YP_001098914.1| hypothetical protein HEAR0586 [Herminiimonas arsenicoxydans] Length = 322 Score = 115 bits (289), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 139/277 (50%), Gaps = 28/277 (10%) Query: 75 LVMPGVDGMTLV----RQYRASPVLANVPIIVLSSRDDPEIKRDAFAGGANDYMV----- 125 +V+ G G TL+ +Q R +L I LS D+ A D +V Sbjct: 58 VVLRGALGNTLLADDTQQVRNDKILPGESIGELSVLDEAVHANALMALEETDLLVIPSRT 117 Query: 126 --KLPDVIELVARLRYHSRSYINLLQRDAAYRALRESQQQL---QKTNFELQRLTNTDGL 180 KL D ++ VAR NLL R ++R LR + QL +K ++L+ DGL Sbjct: 118 LWKLIDEVDGVAR---------NLL-RQLSFR-LRAANAQLRRREKVGEFYRQLSMLDGL 166 Query: 181 TGIANRRYFDDYLSAEWRRARRDAVPLSLLLIDVDFFKRYNDNYGHVAGDTVLRRVAQII 240 TG+ NR + +D L+ A PLSL++ID+D+FK++ND YGH GD LR A ++ Sbjct: 167 TGLYNRAWLNDKLAELVEEAHHAGRPLSLIMIDLDYFKKFNDQYGHQMGDHALRVAAGVL 226 Query: 241 DDTIQRPADLAARFGGEEFAMILPRTPIEGAHSLGLKLCQCIEANQVPHERSDISAWLTV 300 + + RP+D A R+GGEE +ILP + + +LC+ + V + LT Sbjct: 227 NAAL-RPSDFAVRYGGEELTVILPDSNATTGRMVAQRLCERMREAVVFEDMHVPLPHLTA 285 Query: 301 SIGAACVIPGQEQDISELIEMADRRLYLAKQQGRNRV 337 S G A + +Q+ +L+ AD LY AK+ GRN++ Sbjct: 286 SFGIATLDAQHDQE--DLVTRADAALYRAKEAGRNQI 320 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 660,696 Number of extensions: 27051 Number of successful extensions: 211 Number of sequences better than 1.0e-08: 36 Number of HSP's gapped: 170 Number of HSP's successfully gapped: 36 Length of query: 342 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 260 Effective length of database: 730,157 Effective search space: 189840820 Effective search space used: 189840820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)