BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2982.p (633 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093574|ref|YP_001098649.1| hypothetical protein HEAR0293 [... 513 e-146 gi|134094323|ref|YP_001099398.1| putative sensory protein [Hermi... 157 2e-39 gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [... 150 3e-37 gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [... 129 4e-31 gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [... 123 3e-29 >gi|134093574|ref|YP_001098649.1| hypothetical protein HEAR0293 [Herminiimonas arsenicoxydans] Length = 556 Score = 513 bits (1320), Expect = e-146, Method: Compositional matrix adjust. Identities = 263/560 (46%), Positives = 355/560 (63%), Gaps = 18/560 (3%) Query: 78 LAIFLFDPATQRMRVGAAPRMTPQFLAEVCALPV--------PDPDTPQFWHSFTALSER 129 +A+ L + +R+GAAP + P + + + + D + +F L+ + Sbjct: 2 IAVLLLESGNC-LRLGAAPSLHPDYCRAIDGMTMDSKLQITAEDIEANRFCSRLHHLALQ 60 Query: 130 HQICLLELLPLRSFAGAVSGILAVCAQTRALADPAHLDPDYREAVGAAMSMAMLAIERAL 189 H + + + P+RS A + GI ++T A R + + MA +AI R Sbjct: 61 HDLHVCSMTPIRSAANCMLGIFVAYSRTEDTVSDA-----CRHTIADSAIMASIAIARHD 115 Query: 190 VPAHTWVAPEPPGLVDERMALAIEGSGTGIWDRNAVTGEMYYSRGWKAILGYEDWELSSH 249 A A + +ALAIEGSGTGIWDRN TGE+ YS GWKAILGY D E+ + Sbjct: 116 AEARIRKAEDTLLHSKATLALAIEGSGTGIWDRNVPTGEISYSSGWKAILGYTDEEIGNR 175 Query: 250 LEDAYQRIHPEDLPYVQETIRQHFTSQSDTYQVEHRIRCRDGGYKWISSRGKVVARDAAG 309 + D+Y RIHP+DL YVQ I+ HF +++ Y VEHRIRC+DG YKWISSRGKVV+RD G Sbjct: 176 ITDSYARIHPDDLAYVQAAIQAHFDQKTENYAVEHRIRCKDGSYKWISSRGKVVSRDGQG 235 Query: 310 NALRMIGTTTDITEVKQLTEKLAKSSRMLDYLTSEIPGMVFQYRVPPRSHGFFTYISEGA 369 LRMIGTTTDIT ++ L+++L +S ++ LT+E+PG+V+QYRV P H FF Y SE Sbjct: 236 KPLRMIGTTTDITSMRSLSDQLQQSIDLITSLTNEVPGLVYQYRVLPDGHAFFPYASEAI 295 Query: 370 RETYGLTSQQLLENPTLIDTIIHPEDLPMFQAARQAVLDGGSHWMLEFRVIPPGQGVRWL 429 ++ Y LT +Q+ TL+ IIHP+D+ + A+ A W LE+RVI P QG+RW Sbjct: 296 KDIYELTPEQVASTTTLVHQIIHPDDVANYCASLHASASSLLPWHLEYRVILPRQGLRWR 355 Query: 430 RGQARPRRLEDGTTLWHGFVSDISQSKAFELELQELALTDHLTQLPNRRSFMQRLQEEYS 489 +G+ARPRRL DG+TLWHGF++DI++ K E+ELQ A D LTQLPNRR FM R++EE + Sbjct: 356 QGEARPRRLPDGSTLWHGFITDITERKRIEIELQGFATIDFLTQLPNRRYFMTRMEEELA 415 Query: 490 RVQRGVIEGA--AVLMCDLDHFKRVNDSLGHAVGDQVLSHFAALLKGQLRKSDAVGRLGG 547 R +R I+GA AVLMCDLDHFK +NDS GHA+GD VL HFA +L+ LR++D VGR+GG Sbjct: 416 RTRR--IDGARTAVLMCDLDHFKTINDSYGHAIGDLVLKHFAVILRNALRRNDMVGRVGG 473 Query: 548 EEFAVILSRANRQAAAEFALRLQTSFASHPLLHEGGEVEVTISIGIALMQADSSGPEQVL 607 EEFAV+L A A FA R+++ A PL+ + VT+SIGIA+M A + + L Sbjct: 474 EEFAVVLFDAGVAEAEIFAQRVRSQLAEIPLIALNQNINVTVSIGIAMMHASDANIDVSL 533 Query: 608 RASDDALYRAKEKGRNRFEF 627 SD ALYRAK+ GRNR E Sbjct: 534 SRSDTALYRAKQAGRNRIEI 553 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] Length = 710 Score = 157 bits (397), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 127/408 (31%), Positives = 193/408 (47%), Gaps = 25/408 (6%) Query: 230 YYSRGWKAILGYEDWELSSHLEDAYQRI-HPEDLPYVQETIRQHFTSQSDTYQVEHRIRC 288 + S G A+ GY + ++ + +Y I HP+D YV+ + Q T + VE+RI Sbjct: 55 FVSEGCLALTGYTEEDILFNSRVSYDDITHPDDREYVRTAVMQAVTGNR-RFDVEYRIVR 113 Query: 289 RDGGYKWISSRGKVVARDAAGNALRMIGTTTDITEVKQLTEKLAKSSRML-DYLTSEIPG 347 DG +W+ RG D + + G DITE KQ E L ++ R + I G Sbjct: 114 ADGEVRWVWERGTNAMHDNKKWGV-LEGFIQDITERKQADEALREAERRYRSIFENAIEG 172 Query: 348 MVFQYRVPPRSHGFFTYISEGARETYGL-TSQQLLENPTLIDTIIHPEDLPMFQAARQAV 406 + Y+ P S+G+ AR YG T Q L+ I+ ++ + + RQ + Sbjct: 173 I---YQSTP-SNGYLAVNPALAR-MYGYDTPQDLISMLRDIEHQLYVDPQRRIEFMRQ-M 226 Query: 407 LDGGSHWMLEFRVIPPGQGVRWLRGQARPRRLEDGTTLW-HGFVSDISQSKAFELELQEL 465 + G E R+ + W+ AR G L+ G V I++ K E E+Q Sbjct: 227 AENGIVTNFESRIYKSNGDIIWISENARAVHTSTGELLFFEGTVEAITERKLHEAEIQFQ 286 Query: 466 ALTDHLTQLPNRRSFMQRLQEEYSRVQRGVIEGA------AVLMCDLDHFKRVNDSLGHA 519 A D LT LPNR Y R+Q+ V+ A A+ DLD FK +NDSLGH Sbjct: 287 ATHDALTGLPNRTLL-------YDRMQQAVLHSARYGNLTAIAFLDLDQFKFINDSLGHQ 339 Query: 520 VGDQVLSHFAALLKGQLRKSDAVGRLGGEEFAVILSRANRQAAAEFALRLQTSFASHPLL 579 VGD++L A L LR+SD V R GG+EF ++L+ + + ++ + P + Sbjct: 340 VGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLTSQPSEESITHTMQRVLHEVAQPWM 399 Query: 580 HEGGEVEVTISIGIALMQADSSGPEQVLRASDDALYRAKEKGRNRFEF 627 G E +T S+G+ L D E +L+ +D A+Y+AKE GRN F++ Sbjct: 400 ANGLEFRITCSVGVTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQY 447 >gi|134094611|ref|YP_001099686.1| hypothetical protein HEAR1387 [Herminiimonas arsenicoxydans] Length = 832 Score = 150 bits (378), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 123/407 (30%), Positives = 191/407 (46%), Gaps = 29/407 (7%) Query: 236 KAILGYEDWELSSHLEDAYQRI-HPEDLPYVQETIRQHFTSQSDTYQVEHRIRCRDGGYK 294 + ++GY E+ L +A + I HP+D +E +R + T HR R +DG + Sbjct: 167 QEVIGYSYEEI---LHNAIKPILHPDDEEEHKEKLRHLRNTPHSTIFSRHRTRHKDGHWV 223 Query: 295 WISSRGKVVARDAAGNALRMIGTTTDITEVKQLTEKLAKSSRMLDYLTSEIPGMVFQYRV 354 W+ +RG + D+A N L + + DIT K + KL + + ML + P M++ Sbjct: 224 WLETRGYNMLHDSAINGL--VFSIEDITLRKDVELKLQEETAMLRAVLDLNPSMIY---- 277 Query: 355 PPRSHGFFTYISEGARETYGLTSQQLLENPTLIDTIIHPEDLPMFQAARQAVLDGGSHWM 414 S G FT ++ + +G +S+ L T+ D + + +AR+ + Sbjct: 278 VKDSEGRFTISNQVFQRRFGYSSEDELRGKTVYDICLKMANENDKFSAREIADEIQQQDQ 337 Query: 415 LEFRVIPPGQGVR-----------WLRGQARP-RRLEDGTTLWHGFVSDISQSKAFELEL 462 + P Q V W P R + G DI++ K EL++ Sbjct: 338 QVMQTGIPLQDVEAPGFWHSDMHLWFHTSKYPLRDARNNIIGILGVTRDITKRKMTELQI 397 Query: 463 QELALTDHLTQLPNRRSFMQRLQE--EYSRVQRGVIEGAAVLMCDLDHFKRVNDSLGHAV 520 + A+ D LT LPNRR + L E SR Q+ + +L CDLD FK VND+ GH Sbjct: 398 EYQAMHDMLTDLPNRRYLVNTLATAMETSRQQQSSL---TMLFCDLDFFKSVNDTHGHDF 454 Query: 521 GDQVLSHFAALLKGQLRKSDAVGRLGGEEFAVILSRANRQAAAEFALRLQTSFASHPLLH 580 GDQ L + + L +SD V R GG EF VIL+ ++ A + + S L+ Sbjct: 455 GDQCLLEISKRIVAVLPESDFVARFGGNEF-VILTNSSL-AESSIKAKAIARAVSERLVF 512 Query: 581 EGGEVEVTISIGIALMQADSSGPEQVLRASDDALYRAKEKGRNRFEF 627 E V++ +SIGIA + D P ++R +D A+Y+AKE+GRNR E Sbjct: 513 ENVAVKIQVSIGIAQLSPDHQVPADLIREADAAMYQAKERGRNRTEI 559 >gi|134096058|ref|YP_001101133.1| hypothetical protein HEAR2898 [Herminiimonas arsenicoxydans] Length = 314 Score = 129 bits (325), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 83/203 (40%), Positives = 114/203 (56%), Gaps = 19/203 (9%) Query: 440 DGTTLWHGFVSDISQSKAFEL-----------ELQELALTDHLTQLPNRRSFMQRLQEEY 488 D T G SD Q +A + LQ + LTD LT + NRR +RL EE Sbjct: 108 DATRFTSGMASDFLQHRASIVAICVENVINNERLQHIGLTDPLTGVNNRRYVERRLLEEV 167 Query: 489 SRVQRGVIEGAAVLMCDLDHFKRVNDSLGHAVGDQVLSHFAALLKGQLRKSDAVGRLGGE 548 R QR + + DLD FK+VND+ GH GD+VL AA +K +LR SDA+GR GGE Sbjct: 168 GRTQRHG-HTLSAMYIDLDFFKKVNDNYGHQGGDEVLREVAARIKAELRLSDALGRFGGE 226 Query: 549 EFAVILSRANRQAAAEFALRLQTSFASHPLLHEGGE-VEVTISIGIALMQADSSGPE--- 604 EF V+L A +AA A R+++S A+ PL+ GE + +++SIG++ +QA E Sbjct: 227 EFVVLLIDAGMEAALAVAERMRSSIANRPLVLSSGEQLRLSVSIGVSTLQAIERKDEVAT 286 Query: 605 ---QVLRASDDALYRAKEKGRNR 624 Q+L +D ALY AK+ GRN+ Sbjct: 287 IAQQLLAKADQALYLAKQGGRNK 309 >gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans] Length = 568 Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 67/167 (40%), Positives = 100/167 (59%), Gaps = 4/167 (2%) Query: 458 FELELQELALTDHLTQLPNRRSFMQRLQEEYSRVQRGVIEGAAVLMCDLDHFKRVNDSLG 517 + L++LA TD LT L NR +RL EE++R +R I +LM D+D FKRVND G Sbjct: 394 LNITLEQLARTDALTGLANRMHTNERLAEEFARFKRSKIP-YCILMLDVDFFKRVNDIYG 452 Query: 518 HAVGDQVLSHFAALLKGQLRKSDAVGRLGGEEFAVILSRANRQAAAEFALRLQTSFASHP 577 H VGD+VL H A++L +RK+D VGR GGEEF IL + AA A +++ + S P Sbjct: 453 HGVGDEVLKHVASILSATVRKTDFVGRHGGEEFLSILPMTDSSAAMVVAEKIRNTIESTP 512 Query: 578 LLHEGGEVEVTISIGIALMQADSSGPEQVLRASDDALYRAKEKGRNR 624 + G +T+SIG+ + + + + +D+ +Y+AK+ GRN+ Sbjct: 513 I---GPVGNLTVSIGVQEVTVNDINEDVAVTRADECMYQAKKSGRNK 556 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,215,230 Number of extensions: 51595 Number of successful extensions: 246 Number of sequences better than 1.0e-08: 32 Number of HSP's gapped: 196 Number of HSP's successfully gapped: 32 Length of query: 633 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 546 Effective length of database: 713,682 Effective search space: 389670372 Effective search space used: 389670372 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)