BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2980.p (385 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094271|ref|YP_001099346.1| putative aspartate aminotransfe... 122 3e-29 gi|161485636|ref|YP_001100411.2| aminotransferase AlaT [Herminii... 85 5e-18 gi|134094550|ref|YP_001099625.1| putative aminotransferase [Herm... 63 2e-11 gi|134095746|ref|YP_001100821.1| histidinol-phosphate aminotrans... 57 1e-09 >gi|134094271|ref|YP_001099346.1| putative aspartate aminotransferase A [Herminiimonas arsenicoxydans] Length = 368 Score = 122 bits (306), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 106/358 (29%), Positives = 175/358 (48%), Gaps = 17/358 (4%) Query: 31 VNLGQGFPDFHCDPALVAAVTQAMQDGLNQYPPMAGVLPLRQAIAAKVERLYGHRYDPVS 90 +++G G PDF P+++AA QAM DG QY G+ LR AIAA +YG P S Sbjct: 13 IHMGIGEPDFTAAPSVLAAAAQAMADGRMQYTSATGLPELRAAIAAHYRDMYGVDVAP-S 71 Query: 91 DITVTAGATQGILTSVLCAVHPGDEVIVIEPVYDC---YVPAIELAGGVPVCVQMEVGEH 147 I +TAGA+ +L + V G EV++ +P Y C +V A + G + EH Sbjct: 72 RIIITAGASGALLLACAALVEKGAEVLMSDPSYPCNRHFVAAFD--GSAKMIASGP--EH 127 Query: 148 GYSIPWHKVQAAVSAKTRMIMVNTPHNPTGSVMRATDVAALADIVRGTDILILSDEVYEH 207 + + VQ +TR +++ +P NPTG+ + ++ + ++VRG + DE+Y Sbjct: 128 RFQLSADMVQQNWGEQTRGVLLASPSNPTGTSIDEDELRKIVEVVRGKQGFTIVDEIYHG 187 Query: 208 MVYDGQPHESLARHPELAERSFINSSFGKTYHVTGWKVGYVAAPAALTAEFRKVHQFNVF 267 + YD P +L+ L + + +SF K +++TGW++G++ P L K+ Q Sbjct: 188 LRYDAAPFSALS----LGDDVIVINSFSKYFNMTGWRLGWLVVPETLVPPIEKLAQNLFI 243 Query: 268 TVNTPVQY-GLATYMKDP-SPYLDLPAFYQRKRDLFRNGLANTRFEL-LPSQGTYFQCVK 324 ++ Q+ GLA + + Y A ++R+RD L F++ + G ++ Sbjct: 244 CASSLAQHAGLACFAPAAMTVYEARKAEFKRRRDYIVPALEELGFKVPVMPDGAFYVYAD 303 Query: 325 YSAISDLPEAEFCKWLTSEIGVAAIPVSAFYNTPRESGIVRFCFAKKDETLQLALERL 382 SA+SD + E + +E GV +P F + VR +A E LQ A+ RL Sbjct: 304 CSALSDDAD-ELTIAMLNEAGVVMVPGLDFGPSTAHR-YVRISYATSMENLQEAIARL 359 >gi|161485636|ref|YP_001100411.2| aminotransferase AlaT [Herminiimonas arsenicoxydans] Length = 407 Score = 85.1 bits (209), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 79/317 (24%), Positives = 138/317 (43%), Gaps = 37/317 (11%) Query: 89 VSDITVTAGATQGILTSVLCAVHPGDEVIVIEPVYDCYVPAIELAGGVPVCVQMEVGEHG 148 + DI + GA++ I+ S+ ++ GDEV+V P Y + A+ L+GG PV E Sbjct: 95 IDDIYLGNGASELIVMSMNALLNTGDEVLVPSPDYPLWTAAVSLSGGTPV--HYVCDEQA 152 Query: 149 YSIP-WHKVQAAVSAKTRMIMVNTPHNPTGSVMRATDVAALADIVRGTDILILSDEVYEH 207 P ++ +++ T+ I+V P+NPTG++ + + D+ R +++ +DE+Y+ Sbjct: 153 DWFPDIDDIRKKINSNTKAIVVINPNNPTGALYPVELLQQIVDLAREHQLIVFADEIYDK 212 Query: 208 MVYDGQPHESLARHPELAERSFIN-SSFGKTYHVTGWKVGYVAAPAALTAEFRKVHQFNV 266 ++YDG H+S+A + + FI + K Y G++ G++ + N+ Sbjct: 213 VLYDGAKHDSIASLAD--DVLFITFNGLSKNYRACGYRAGWMIVSGEKRYAKDYIEGLNM 270 Query: 267 FT-----VNTPVQYGLATYMKDPSPYLDL---PAFYQRKRDLFRNGLANTRFELLPSQGT 318 N P QY + T + DL R+RD LA+ +P Sbjct: 271 LASMRLCANAPGQYAIQTALGGYQSINDLVGPGGRLTRQRD-----LAHKLLTEIPG--- 322 Query: 319 YFQCVK-YSAISDLP-----------EAEFCKWLTSEIGVAAIPVSAFYNTPRESGIVRF 366 CVK SA+ P + +F L +E V + + F N P R Sbjct: 323 -VTCVKPKSALYMFPRLDPKMYPIKDDQDFAYQLLAEESVLIVQGTGF-NCPTPDHF-RV 379 Query: 367 CFAKKDETLQLALERLA 383 F + L +A+ R+A Sbjct: 380 VFLPNSDDLTIAIGRIA 396 >gi|134094550|ref|YP_001099625.1| putative aminotransferase [Herminiimonas arsenicoxydans] Length = 312 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/296 (23%), Positives = 122/296 (41%), Gaps = 18/296 (6%) Query: 97 GATQGILTSVLCAVHPGDEVIVI--EPVYDCYVPAIELAGGVPVCVQMEVGEHGYSIPWH 154 G+ + + + P +V+ P+Y Y A LAG P V + + ++ + Sbjct: 6 GSREALFALAQTVIDPSQHALVVCPNPLYQIYEGAAYLAGAQPYFVNCDPARN-FAPDFA 64 Query: 155 KVQAAVSAKTRMIMVNTPHNPTGSVMRATDVAALADIVRGTDILILSDEVYEHMVYDGQ- 213 + V ++ +++ V +P NP G+V+ D A L + + +I +DE Y + + + Sbjct: 65 AITHEVWSRVQLVYVCSPGNPAGAVLTLDDWAELFALSDRYNFVIAADECYSEIYFKAEA 124 Query: 214 PHESLARHPELAERSFIN----SSFGKTYHVTGWKVGYVAAPAALTAEFRKVHQFNVFTV 269 P L +L + + SS K +V G + G+VA A + +F ++ + Sbjct: 125 PLGGLEAAHKLGRKGYPRLIGFSSLSKRSNVPGMRSGFVAGDAEILKKFLLYRTYHGSAM 184 Query: 270 NTPVQYGLATYMKDPSPYLDLPAFYQRKRDLFRNGLANTRFELLPSQGTYF--QCVKYSA 327 + VQ D +D Y +K + L LP G Y + K +A Sbjct: 185 SPSVQSASIAAWNDEQHVIDNREKYIQKFNQVTPLLQEVMDVSLPDAGFYLWAKVDKLAA 244 Query: 328 ISDLPEAEFCKWLTSEIGVAAIPVS-----AFYNTPRESGIVRFCFAKKDETLQLA 378 I D+ EF K L +E V +P S A P ++ I A+ DE L+ A Sbjct: 245 IGDI---EFAKRLYAEYNVTVLPGSYLGREAHGINPGQNRIRMALVAEVDECLEAA 297 >gi|134095746|ref|YP_001100821.1| histidinol-phosphate aminotransferase [Herminiimonas arsenicoxydans] Length = 368 Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 21/214 (9%) Query: 60 QYPPMAGVLPLRQAIAAKVERLYGHRYDPVSDITVTAGATQGILTSVLCAVHPGDEVIVI 119 +YP G L+ A+ AK YG P IT+ G+ + S V PG VI Sbjct: 65 RYPDGNG-FELKAALTAK----YGV---PAEWITLGNGSNDILELSAHAFVQPGQSVIYA 116 Query: 120 EPVYDCYVPAIELAGGVPVCVQMEVGEHGYSIPWHKVQAAVSAKTRMIMVNTPHNPTGSV 179 + + Y A + GG + V + + G+ + + A+ TR+I + P+NPTG+ Sbjct: 117 QYSFAVYPLATQAVGGRSLVVAAK--DFGHDL--EAMIDAIEDDTRLIFIANPNNPTGTF 172 Query: 180 MRATDVAALADIVRGTDILILSDEVYEHMVYDGQPHESL---ARHPELAERSFINSSFGK 236 + ++ + V +++++ DE Y + ++S+ A++P L ++ S K Sbjct: 173 IPGHEIESFLKRVP-PNVVVVLDEAYTEFLAPELQYDSIAWVAQYPNL----LVSRSMSK 227 Query: 237 TYHVTGWKVGYVAAPAALTAEFRKVHQ-FNVFTV 269 Y + G ++GY A +T ++ Q FNV ++ Sbjct: 228 VYGLAGLRIGYGIAQPGITDLLNRIRQPFNVNSL 261 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 754,458 Number of extensions: 32157 Number of successful extensions: 108 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 5 Length of query: 385 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 302 Effective length of database: 726,862 Effective search space: 219512324 Effective search space used: 219512324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)