BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2977.p
         (258 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095134|ref|YP_001100209.1| hypothetical protein HEAR1935 [...   381   e-107

>gi|134095134|ref|YP_001100209.1| hypothetical protein HEAR1935
           [Herminiimonas arsenicoxydans]
          Length = 281

 Score =  381 bits (979), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 179/256 (69%), Positives = 215/256 (83%)

Query: 1   MLIVLSPAKSLDYDTPPTTDVHTTPAFVPRSAELIEVLKTKSPAEIGSLMGISDQLSVLN 60
           MLIVLSPAK+LDY+TP  T++ T P F+ RSAELIE+L+  +P  IGSLM ISDQL+ LN
Sbjct: 24  MLIVLSPAKTLDYETPANTEISTKPDFIKRSAELIEILREFAPDRIGSLMRISDQLATLN 83

Query: 61  VSRYASWSRKFTTKNAKQAVLAFNGDVYEGLDAASLAAGQLDYLQQHVRILSGLYGMLRP 120
            +RYA+WS KFT KN+KQA+LAFNGDVYEGLDAASL A QL Y Q H+RILSGLYG+LRP
Sbjct: 84  ANRYAAWSPKFTLKNSKQAMLAFNGDVYEGLDAASLNAKQLAYAQSHIRILSGLYGVLRP 143

Query: 121 LDLMQPYRLEMGTKLANPLGKDLYAFWGSEITEALNGELAAQKTPVLVNLASEEYFKVVK 180
           LDLMQPYRLEMGT+LANP GKDLYAFWG+ +T+ LN  +A Q++  LVNLASEEYFKVVK
Sbjct: 144 LDLMQPYRLEMGTRLANPAGKDLYAFWGNTVTDKLNQRIAEQQSEALVNLASEEYFKVVK 203

Query: 181 PKLLKAQVVAPVFEDWKGGKYKIISFYAKRARGLMARYAALKNINQPEKLKAFDLEGYAF 240
           P LLKA V+ PVF+DWK G+YKIISFYAKRARGLMARYAA + + +P  LK+FD++GY F
Sbjct: 204 PTLLKAPVITPVFQDWKNGQYKIISFYAKRARGLMARYAATEGVTRPTDLKSFDVDGYEF 263

Query: 241 APEASSESSWVFRRKL 256
              AS+E++W+FRRK+
Sbjct: 264 DAGASNETTWMFRRKV 279


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 438,993
Number of extensions: 16438
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 178
Effective length of database: 736,747
Effective search space: 131140966
Effective search space used: 131140966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)