BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2976.p
         (266 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095126|ref|YP_001100201.1| TPR repeat-containing protein [...   374   e-105

>gi|134095126|ref|YP_001100201.1| TPR repeat-containing protein
           [Herminiimonas arsenicoxydans]
          Length = 261

 Score =  374 bits (960), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/262 (68%), Positives = 220/262 (83%), Gaps = 1/262 (0%)

Query: 5   LLKFFIIGFALSLTACGLLPEQKDETVGWSAAKLYSEAKDELNAGGYDKAIKYFEKLESR 64
           +LK   I  A  L+AC L P+Q DET  WS +KLYSEA++E+N G Y+KA+ +FEKLESR
Sbjct: 1   MLKLTYIALAFLLSACSLTPDQIDETKNWSPSKLYSEAREEMNTGNYEKAVSHFEKLESR 60

Query: 65  YPFGTYAQQAQMDIAYAYYRQNEQAQGLAAVDRFIKLHPNHPNVDYMYYLRGLINFNDRT 124
           YPFGTYAQQAQM+IAYAYYRQ +Q Q LAAV+RFIKLHP+HPNVDYMYYLRGLINFND+ 
Sbjct: 61  YPFGTYAQQAQMEIAYAYYRQGDQPQALAAVERFIKLHPDHPNVDYMYYLRGLINFNDKV 120

Query: 125 SIFDTFTDQDNTERDPKAMRDAFDSFKLLAERFPESKYTPDAIARMKYLVNAMAQYDVHV 184
           S+FD  + QD TERDPKA R+AFDSFKLL ERFP+SKYTPDA AR+ YLVNAMAQYDVHV
Sbjct: 121 SVFDFLSRQDPTERDPKAAREAFDSFKLLTERFPDSKYTPDASARLAYLVNAMAQYDVHV 180

Query: 185 ASYYYRRGAYVSAANRAQAAIKQYPDSPANEEALFILMHSYEALGQTKLKEDTERIIQAT 244
           A+YYYRRGAY++AANRAQAA+K YP +PA E AL++++ SY+AL   +L++D ER+++  
Sbjct: 181 ANYYYRRGAYLAAANRAQAAVKNYPGAPAAEGALYVMIQSYDALNLPQLRDDAERVMKTN 240

Query: 245 YPNSPWYHGGPKKKDNPWWKIW 266
           +PNS ++HGGP KKD PWW+IW
Sbjct: 241 FPNSVYFHGGP-KKDKPWWQIW 261


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 513,784
Number of extensions: 20038
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 186
Effective length of database: 736,747
Effective search space: 137034942
Effective search space used: 137034942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)