BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2974.p
         (248 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095124|ref|YP_001100199.1| hypothetical protein HEAR1925 [...   278   1e-76

>gi|134095124|ref|YP_001100199.1| hypothetical protein HEAR1925
           [Herminiimonas arsenicoxydans]
          Length = 250

 Score =  278 bits (712), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 159/250 (63%), Positives = 177/250 (70%), Gaps = 2/250 (0%)

Query: 1   MELLIPDWAAP-ANIGALTTLRAGGYSPAPYDDGQGGGGLNLGTHVEDDPALVARNRALL 59
           MEL++P W      + AL T R  G SPAPYDDGQGGGGLNLG HV D    V  NRA +
Sbjct: 1   MELILPQWGKKLPGVRALATTRPCGNSPAPYDDGQGGGGLNLGVHVGDASDCVQLNRAQI 60

Query: 60  RRLLPAEPAWLTQVHGVNVLDAAALPDDACADACISSTPGAVCVMMTADCLPVLFCDHAG 119
           RR LP EPAWLTQVHG  VLDAA + D   ADA  ++  G VC +MTADCLPVLF D AG
Sbjct: 61  RRHLPGEPAWLTQVHGTTVLDAAKVSDAPSADASFTTQRGVVCAIMTADCLPVLFADAAG 120

Query: 120 TVVGAAHAGWRGLAAGVLEQTVAAMRARGADQIMAWLGPAIGADNFEVGAEVRETFLAQQ 179
            VVGAAHAGWRGLA GVLE TVAAMRA G D + AWLGPAIG   FEVG EV + F A+ 
Sbjct: 121 RVVGAAHAGWRGLAGGVLENTVAAMRAAGGDTLHAWLGPAIGPMQFEVGEEVLQVFAAKN 180

Query: 180 AQADAAFRPYPGRPGKYLADIYRLARQRLAMVEVRDVSGGGLCTVADT-RFYSYRRDRTT 238
                AF+P   RPGKYLADIY+LAR  LA V V DVSGG  CT+++T RFYSYRRD  T
Sbjct: 181 PLMRHAFQPVAARPGKYLADIYQLARSTLANVGVMDVSGGNFCTISETRRFYSYRRDGVT 240

Query: 239 GRMGSLIWLK 248
           GRM SL+WL+
Sbjct: 241 GRMASLVWLE 250


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 361,255
Number of extensions: 10557
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 169
Effective length of database: 740,042
Effective search space: 125067098
Effective search space used: 125067098
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)