BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2973.p (297 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 333 8e-93 gi|134094687|ref|YP_001099762.1| putative DNA-binding transcript... 193 8e-51 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 76 3e-15 gi|134095322|ref|YP_001100397.1| methionine biosynthesis [Hermin... 70 2e-13 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 69 2e-13 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 333 bits (853), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 156/287 (54%), Positives = 211/287 (73%) Query: 4 RFELSDLRLFLHIVESGSITAGAQRAHMALASASARIRNMEDALGTALLERGRRGVQSTD 63 RF+L+DL LFLH VE+GSITAGA+R+H++LASASARIR ME+ LG LL RG+RGV++T Sbjct: 2 RFDLTDLTLFLHSVETGSITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEATP 61 Query: 64 AGRALAHHARMVAQQMEQMRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLAQHPY 123 G+AL HHAR+ +Q E+MR EL +YA+GLKGH+R++ NT ++TEFLPE L+ FLA HP Sbjct: 62 VGKALVHHARIALRQQERMRGELSEYAQGLKGHVRIMSNTVSLTEFLPEALSNFLATHPN 121 Query: 124 TDIELEEKLSYEVVQAVVDGVADIGIIADSTDSGPLQTYPFRQDHLVAVLSRKHPLARRK 183 +I+LEE+LS+E+V A+ +G DIGI++DS D +T+PF D L V++R HPL+ R Sbjct: 122 VNIDLEERLSFEIVSALTEGTIDIGILSDSVDFSGFETFPFHDDRLTLVVARDHPLSVRS 181 Query: 184 SLTFSELLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVGIAV 243 S+ F+E L DF+GL SALQ++LS A + G+R +YRVRLRSFD +CRM+E VGI V Sbjct: 182 SIHFAETLDYDFIGLQEGSALQEYLSEQAAKMGRRFKYRVRLRSFDAVCRMIERNVGIGV 241 Query: 244 MPETAALAGAARMDIRAIPLSDGWSRRQLLICVRGLEGLPGPTRELI 290 +PE AA MDI + + D WS R+L+IC + LP ++LI Sbjct: 242 VPEAAANRLKKSMDIHTVSILDSWSSRKLIICAQSYSDLPIHAQQLI 288 >gi|134094687|ref|YP_001099762.1| putative DNA-binding transcriptional regulatory transcription regulator protein [Herminiimonas arsenicoxydans] Length = 305 Score = 193 bits (491), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 114/283 (40%), Positives = 170/283 (60%), Gaps = 1/283 (0%) Query: 4 RFELSDLRLFLHIVESGSITAGAQRAHMALASASARIRNMEDALGTALLERGRRGVQSTD 63 RF+L L LF+ + +GSIT GAQ+A++ALA+AS RI ++E LGT LL R GV TD Sbjct: 5 RFDLITLSLFVDVARTGSITRGAQQANLALAAASKRISDLEAHLGTVLLYRHANGVTLTD 64 Query: 64 AGRALAHHARMVAQQMEQMRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLAQHPY 123 AG A HA + Q +E+M + YA G++G +R+ NTSA+T+FLP+ L F+ H Sbjct: 65 AGNACFQHALGIIQDVERMSGVMSDYASGIRGQVRIWANTSAITQFLPDDLHAFMQAHAG 124 Query: 124 TDIELEEKLSYEVVQAVVDGVADIGIIADSTDSGPLQTYPFRQDHLVAVLSRKHPLARRK 183 I++EE+ S +VV + + DIGI AD T + + + +R+ L V+ + HPLA K Sbjct: 125 VRIDIEERNSGDVVAGIRENRTDIGIFADPTPAEGIAVFTYRKQKLGLVVPKNHPLAAHK 184 Query: 184 SLTFSELLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVGIAV 243 ++ S+ L DFV L+ ++L + L +R K L+ R ++RSFD +CRMV+ VGI V Sbjct: 185 QVSLSDALDYDFVSLAEATSLTERLHAACSRLQKPLKLRAQVRSFDAVCRMVKAGVGIGV 244 Query: 244 MPETAALAGAARMDIRAIPLSDGWSRRQLLICVRGLEGLPGPT 286 +P A A + + + + D W+ R LL+ VR + LP P Sbjct: 245 VPFLTQ-AEARSLGLHFLRVDDAWAERTLLLAVRDVRALPVPV 286 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 75.9 bits (185), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 69/278 (24%), Positives = 119/278 (42%), Gaps = 12/278 (4%) Query: 7 LSDLRLFLHIVESGSITAGAQRAHMALASASARIRNMEDALGTALLERGRRGVQSTDAGR 66 L++L+ + + A+ H+A + S I+ +ED LG L ERG + T G Sbjct: 3 LTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPLGV 62 Query: 67 ALAHHARMVAQQMEQMRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLAQHPYTDI 126 + A V +Q +++ Q L G RL + LP ++ + + P + Sbjct: 63 QIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQMPL 122 Query: 127 ELEEKLSYEVVQAVVDGVADIGIIADSTDSGPLQTYPFRQDHLVAVLSRKHPLARRKSLT 186 L+E + ++++ + G D I+A L P + V + + HP A R S+T Sbjct: 123 VLQENFTVKLLEQLRQGEIDAAIVALPIPDQGLLVQPVYDEPFVVAVPKHHPWAERSSVT 182 Query: 187 FSELLGEDFVGLSG-----DSALQ--QHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQV 239 L E + L D L+ +S +T +G + S + I MV + Sbjct: 183 TDNLKSETMLLLGNGHCFRDQVLEVCPEMSRFST-SGDGIARTFEGSSLETIRHMVASGI 241 Query: 240 GIAVMPETAALAGAARMD--IRAIP-LSDGWSRRQLLI 274 GI V+P+ A++ D +R IP + G SRR +L+ Sbjct: 242 GITVLPQ-ASVPDMHTTDGMLRYIPFVQPGPSRRVVLV 278 >gi|134095322|ref|YP_001100397.1| methionine biosynthesis [Herminiimonas arsenicoxydans] Length = 306 Score = 69.7 bits (169), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/284 (21%), Positives = 130/284 (45%), Gaps = 2/284 (0%) Query: 1 MSNRFELSDLRLFLHIVESGSITAGAQRAHMALASASARIRNMEDALGTALLERGRRGVQ 60 M + EL L+ + + E+G++ A ++ ++ S +++ +ED GT L ER V+ Sbjct: 1 MQSILELRHLKTLIALREAGNLLRAASLLNVTQSALSHQLKQLEDHHGTQLFERKSVPVR 60 Query: 61 STDAGRALAHHARMVAQQMEQMRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLAQ 120 T AG L A V Q+ + +L + A+G+ G +R+ ++L + F + Sbjct: 61 FTPAGERLLKLADTVLPQVAETERDLVRLAQGVAGQLRIAVECHTCFDWLMPAMDVFRGR 120 Query: 121 HPYTDIELEEKLSYEVVQAVVDGVADIGIIADSTDSGPLQTYPFRQDHLVAVLSRKHPLA 180 P ++++ + V + + AD+ I+A+ + + + +VA+++ HPLA Sbjct: 121 WPEVELDIVSGFQADPVGLLYEHRADVAIVAEIDPDETVDYHALFRFEIVALVAHDHPLA 180 Query: 181 RRKSLTFSELLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVG 240 ++ L + +G+ + + + AG +++ R + + ++V + G Sbjct: 181 DKEFLVAEDFIGDTLITYPVPDDMLDVVRQVLKPAGIKVERRTTELTV-AMLQLVASRRG 239 Query: 241 IAVMPETAALAGAARMDIRAIPLS-DGWSRRQLLICVRGLEGLP 283 IA +P AA R ++A ++ DG + R C+ + P Sbjct: 240 IATLPVWAAQNYLNRDYVKAKRITADGLTGRLYAACLPEVSEKP 283 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 69.3 bits (168), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/267 (22%), Positives = 114/267 (42%), Gaps = 8/267 (2%) Query: 7 LSDLRLFLHIVESGSITAGAQRAHMALASASARIRNMEDALGTALLERGRRGVQSTDAGR 66 L L++F + S + A+ H+ + S +++ +ED G AL E+ + + T G Sbjct: 50 LRQLKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGT 109 Query: 67 ALAHHARMVAQQMEQMRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLAQHPYTDI 126 L H++R + QQ ++ D + Q+ +G+ G + SA F P +L F H + Sbjct: 110 ELLHYSRTIIQQFQEAEDAMTQF-KGITGGKLNVAVISAGDYFFPRLLVEFARSHQGVTL 168 Query: 127 ELEEKLSYEVVQAVVDGVADIGIIADSTDSGPLQTYPFRQDHLVAVLSRKHPLARRKSLT 186 L ++ + + + D+ I+ PF V V + H L +K++ Sbjct: 169 NLSVHNREGLLNQLANNLTDLAIMVRPPTDMDTINEPFAPHPYVIVAAPDHHLVSKKNIP 228 Query: 187 FSELLGEDFVGL-SGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVGIAVMP 245 S L+ E FV G G +R L + ++S + I + V +GI+ + Sbjct: 229 MSTLIHEPFVVREKGSDTWHSMEDGFGSRIDD-LNIAMEIKSTETIKQAVIAGMGISFLS 287 Query: 246 -ETAAL---AGA-ARMDIRAIPLSDGW 267 T ++ AG+ +D+ P+ W Sbjct: 288 AHTISMELQAGSLTVLDVEGFPVMLNW 314 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 539,547 Number of extensions: 21445 Number of successful extensions: 90 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 90 Number of HSP's successfully gapped: 12 Length of query: 297 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 216 Effective length of database: 733,452 Effective search space: 158425632 Effective search space used: 158425632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)