BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2971.p
         (89 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095123|ref|YP_001100198.1| hypothetical protein HEAR1924 [...    88   9e-20

>gi|134095123|ref|YP_001100198.1| hypothetical protein HEAR1924
          [Herminiimonas arsenicoxydans]
          Length = 74

 Score = 87.8 bits (216), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 57/72 (79%), Gaps = 3/72 (4%)

Query: 1  MVIVAIAWLYVVFMMSITEQSVIAGVATFLLYGIIPLTIVLYLMGTPQRKRNR--QKMKK 58
          M I+AIAW+YVVFMMSI E SVIAG+ TFLLYG++P++I++Y+MGT QRKR R  Q+M++
Sbjct: 1  MYIIAIAWIYVVFMMSIMETSVIAGIMTFLLYGVLPVSIIVYVMGTGQRKRKRRAQEMQR 60

Query: 59 SSAI-HPQERDD 69
             I +  ER+ 
Sbjct: 61 REEIMNNAEREK 72


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 164,572
Number of extensions: 5162
Number of successful extensions: 13
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 89
Length of database: 1,000,347
Length adjustment: 58
Effective length of query: 31
Effective length of database: 809,237
Effective search space: 25086347
Effective search space used: 25086347
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 121 (51.2 bits)