BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2970.p (596 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095122|ref|YP_001100197.1| Poly-beta-hydroxybutyrate polym... 699 0.0 gi|134095518|ref|YP_001100593.1| Poly(3-hydroxyalkanoate) polyme... 345 2e-96 >gi|134095122|ref|YP_001100197.1| Poly-beta-hydroxybutyrate polymerase [Herminiimonas arsenicoxydans] Length = 537 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/524 (63%), Positives = 410/524 (78%), Gaps = 2/524 (0%) Query: 70 LEPADLVRLQQDYTREFGELWQSMLAAKTPAITDRRLSAPAWQEHPYFAFQAAAYQLNSR 129 ++PA LQ+DY ++F LWQ ML A+ P + D+R SA AWQ AF A+ Y LN++ Sbjct: 14 IDPAVAAELQRDYAQKFLTLWQQMLTAQVPPLADKRFSAAAWQSSTLHAFNASVYLLNAQ 73 Query: 130 FLLALADAVKGTEKVRHKLRFAVQQMIDAMSPANFLATNPVAQQKILETRGESLTQGIAQ 189 FL A+ADA++ T KV+ K+RF V+QM++AMSPANFL +NP AQQKI+ET G SLT G+ Sbjct: 74 FLAAMADAMQVTPKVKQKIRFGVEQMVNAMSPANFLFSNPEAQQKIVETNGASLTNGLKH 133 Query: 190 LLADVQKGHISQTDETAFEVGRDVGASEGSVIFETELFQLIQYKPLTKTVHAVPLLIVPP 249 L D+QKG ISQ+DE+AFEVGR+V +EG+VIFE +LFQL+QYK LT TV+ PLL+VPP Sbjct: 134 LFEDMQKGRISQSDESAFEVGRNVAITEGAVIFENDLFQLLQYKALTPTVYERPLLLVPP 193 Query: 250 CINKFYILDLQPHNSLVRYTVEQGHTVFLISWRNADAAVETATWDNYVDDAVVRCIHIVQ 309 CINK+YILDLQPHNS VRY VEQGHTVFLISWRNADA++ ATWD+YV+ V++ I + Q Sbjct: 194 CINKYYILDLQPHNSFVRYAVEQGHTVFLISWRNADASIAHATWDDYVESGVLQAISVAQ 253 Query: 310 EISKQPQINALGFCVGGTILSCALALLAARGEDPVASLTLLTTFLDFSDTGAIDVYIDEM 369 IS Q +IN LGFCVGGT+L+ ALAL ARGE P ASLTLLTTFLDFSDTG +DVYIDE Sbjct: 254 AISVQEKINVLGFCVGGTMLANALALACARGEKPAASLTLLTTFLDFSDTGILDVYIDEA 313 Query: 370 QLALREQMIGQRGLMAGRDFASAFSSLRPNDLLWNYVESNYLKGEKPSAFDLLYWNADST 429 ++ E++IG GLM G DF +AF+SLR N+L+WNYV SNYLKGE P FD+LYWNADST Sbjct: 314 KIKETEELIGHGGLMKGLDFNAAFASLRSNELIWNYVTSNYLKGENPVPFDMLYWNADST 373 Query: 430 NLPGPMFCYYLRHMYLENALKEPGRLSVGGEKIDLRKISAPAFIYASRDDHIVPWKSAYA 489 NLPGPM+C+Y+R+ YLEN LK+ G+ + G+KID KI AP+FIY SRDDHIVPW SAYA Sbjct: 374 NLPGPMYCWYVRNTYLENNLKQLGKFKLAGKKIDFGKIDAPSFIYGSRDDHIVPWTSAYA 433 Query: 490 SLGLINTGKRSNNRFVLGASGHIAGVINPASKNKRNYWLNDKAKVGSDADTWLAGATEHP 549 S ++N K NRFVLGA+GHIAGVINP K+KR+YW+ND+ + +DA +WLAGATE Sbjct: 434 STAILNRKKPQQNRFVLGAAGHIAGVINPPGKSKRHYWINDQRE--TDALSWLAGATEVA 491 Query: 550 GSWWGEWAAFLAKHGGRKVAAPKTAGSTRYKHIEAAPGRYVKVK 593 GSWW W+ FLA+H G+KV AP G+ +K IEAAPGRYVKVK Sbjct: 492 GSWWPAWSDFLAQHAGKKVKAPHKMGNAEFKPIEAAPGRYVKVK 535 >gi|134095518|ref|YP_001100593.1| Poly(3-hydroxyalkanoate) polymerase, PHA synthase, PhbC-like [Herminiimonas arsenicoxydans] Length = 625 Score = 345 bits (886), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 185/476 (38%), Positives = 270/476 (56%), Gaps = 11/476 (2%) Query: 98 TPAITDRRLSAPAWQEHPYFAFQAAAYQLNSRFLLALADAVKGTEKVRHKL-RFAVQQMI 156 TP D+R + P+W++ P F + + L ++ V+G K + F V+Q++ Sbjct: 136 TPLSQDQRFNDPSWKKWP-FNTISQGFLLQEQWWQRATTGVRGVSKHHEDVVTFTVRQLL 194 Query: 157 DAMSPANFLATNPVAQQKILETRGESLTQGIAQLLADVQKGHISQTDE--TAFEVGRDVG 214 D ++P+NF TNPV QQ +++ G + QG + D ++ S T E AF+VGRD+ Sbjct: 195 DTLAPSNFPLTNPVVQQAAIQSWGHNFVQGWLNAVEDWRRSIASDTTEPDDAFKVGRDIA 254 Query: 215 ASEGSVIFETELFQLIQYKPLTKTVHAVPLLIVPPCINKFYILDLQPHNSLVRYTVEQGH 274 S G V+F L +LIQY P TKTVHAVPLL VP I K+YILDL P NSLVRY V QG+ Sbjct: 255 ISPGKVVFHNNLIELIQYTPTTKTVHAVPLLFVPAWIMKYYILDLSPQNSLVRYMVSQGY 314 Query: 275 TVFLISWRNADAAVETATWDNYVDDAVVRCIHIVQEISKQPQINALGFCVGGTILSCALA 334 TVF+ISW+N A + ++Y V+ I + E++ PQ+NA G+C+GGT+LS A A Sbjct: 315 TVFMISWKNPLAEDRNLSMEDYRKLGVMAAIDAITELTHAPQLNAAGYCLGGTLLSIASA 374 Query: 335 LLAARGEDPVASLTLLTTFLDFSDTGAIDVYIDEMQLALREQMIGQRGLMAGRDFASAFS 394 +A G++ +AS++L +DF + G + ++IDE Q++ E ++ +G + + A AF Sbjct: 375 SMACHGDERIASMSLFAAQVDFEEPGELSLFIDESQISFLEAIMWDQGYLDTKQMAGAFQ 434 Query: 395 SLRPNDLLWNYVESNYLKGEKPSAFDLLYWNADSTNLPGPMFCYYLRHMYLENALKEPGR 454 LR NDL+W+ + YL G DL+ WNAD+T +P M YLRH++L N L E GR Sbjct: 435 LLRSNDLIWSRRLNQYLLGLSEKKSDLMTWNADATRMPYRMHSEYLRHLFLHNDLAE-GR 493 Query: 455 LSVGGEKIDLRKISAPAFIYASRDDHIVPWKSAYASLGLINTGKRSNNRFVLGASGHIAG 514 G+ I L IS P F + DH+ PW+S + L +T F L + GH AG Sbjct: 494 YFTEGKSIHLTDISIPIFAVGTLTDHVAPWRSVFKIHRLADT----EVTFALTSGGHNAG 549 Query: 515 VINPASKNKRNYWLNDKAKV--GSDADTWLAGATEHPGSWWGEWAAFLAKHGGRKV 568 V++P R+Y + A DADTW A GSWW W ++L G+++ Sbjct: 550 VVSPPGHPDRSYQIATHADKDHAMDADTWQATVARKEGSWWPAWESWLRMKSGKRI 605 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,100,212 Number of extensions: 43668 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 2 Length of query: 596 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 509 Effective length of database: 713,682 Effective search space: 363264138 Effective search space used: 363264138 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)