BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2967.p
         (458 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095120|ref|YP_001100195.1| ribosomal protein S12 methylthi...   811   0.0  
gi|134093658|ref|YP_001098733.1| (dimethylallyl)adenosine tRNA m...   150   1e-37

>gi|134095120|ref|YP_001100195.1| ribosomal protein S12
           methylthiotransferase [Herminiimonas arsenicoxydans]
          Length = 454

 Score =  811 bits (2096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/453 (88%), Positives = 427/453 (94%), Gaps = 1/453 (0%)

Query: 6   TPASPALPKVGFVSLGCPKALVDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAV 65
           T A PA PK+GFVSLGCPKALVDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAV
Sbjct: 2   TNAPPATPKIGFVSLGCPKALVDSEQILTQLRAEGYDTAKSYDGADLVIVNTCGFIDAAV 61

Query: 66  QESLDAIGEALNENGKVIVTGCLGAKKDAEGEDIIQKIHPKVLEVTGPHAVGEVMQAVHK 125
           QESLDAIGEAL+ENG+VIVTGCLGAKKDA G+DIIQK+HPKVL VTGPHA+GEVM AVH 
Sbjct: 62  QESLDAIGEALHENGRVIVTGCLGAKKDANGDDIIQKVHPKVLAVTGPHALGEVMDAVHL 121

Query: 126 HLPKPHAPFIDLVPPQGVKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIADVML 185
           H+PKPHAPF+DL+PPQG+KLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIADVM+
Sbjct: 122 HMPKPHAPFLDLLPPQGIKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSRPIADVMM 181

Query: 186 EAENLFKAGVKELLVISQDTSAYGVDVKFRTGFWNGKPLKTHMTQLVGALGELAQQYGAW 245
           EAENLFKAGVKELLVISQDTSAYGVD+KFR GFWNGKP+KTHMTQLV ALGELA  YGAW
Sbjct: 182 EAENLFKAGVKELLVISQDTSAYGVDIKFRMGFWNGKPVKTHMTQLVEALGELAAPYGAW 241

Query: 246 VRLHYVYPYPHVDQIIPLMAEGKILPYLDVPLQHAHPDVLKRMKRPANGEKNIERIQAWR 305
           VRLHYVYPYPHVD IIP+MAEGKILPYLDVPLQHAHPDVLKRMKRPA+GEKNIERIQAWR
Sbjct: 242 VRLHYVYPYPHVDAIIPMMAEGKILPYLDVPLQHAHPDVLKRMKRPASGEKNIERIQAWR 301

Query: 306 AMCPDLTIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGATANEIANPVP 365
           AMCPDLTIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGATAN++ N VP
Sbjct: 302 AMCPDLTIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGATANDLPNAVP 361

Query: 366 EEVREERRGRVMQLQEEISKKRLQAKVGKTLRVLIDEVDRNG-GTGRTYSDAPEIDGVVY 424
           EEVREERRGRVM LQEEISKKRLQAKVGKT+RVLIDEV+R G  T R+ +DAPEIDGVVY
Sbjct: 362 EEVREERRGRVMLLQEEISKKRLQAKVGKTMRVLIDEVNRTGAATARSGADAPEIDGVVY 421

Query: 425 VKPPFEPHRKLEVGQFVDVRISAADAHDLWGAA 457
           VK P+EPH K +VG+FVDV+I+ ADAHDLW  A
Sbjct: 422 VKAPYEPHIKYKVGEFVDVKITGADAHDLWAEA 454


>gi|134093658|ref|YP_001098733.1| (dimethylallyl)adenosine tRNA
           methylthiotransferase [Herminiimonas arsenicoxydans]
          Length = 446

 Score =  150 bits (380), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 219/467 (46%), Gaps = 55/467 (11%)

Query: 14  KVGFVSLGCPKALVDSEQILTQLRA-EGYDTAKSYDGADLVIVNTCGFIDAAVQESLDAI 72
           K+   + GC     DS+++   L A +G       + AD++++NTC   + A ++    +
Sbjct: 4   KIYIKTFGCQMNEYDSDKMADVLNASDGLIKTDKAEDADVILLNTCSVREKAQEKVFSDL 63

Query: 73  G-----EALNENGKVIVTGCLGAKKDAEGEDIIQKIHPKVLEVTGPHAVGEVMQAVHKH- 126
           G     + L  +  + V GC+ ++   EG+ II++  P V  V GP  +  + + + +  
Sbjct: 64  GRLRELKLLKPDLMIGVGGCVASQ---EGDAIIKRA-PYVDLVFGPQTLHRLPEMLKQRR 119

Query: 127 --------LPKPHAPFIDLVPPQGVKLTPKHFAYLKISEGCNHRCSFCIIPSMRGDLVSR 178
                   +  P     D +PP  V+      A++ I EGC+  CS+C++P  RG+ VSR
Sbjct: 120 STGRSQVDISFPEIEKFDHMPPAKVEGAT---AFVSIMEGCSKYCSYCVVPYTRGEEVSR 176

Query: 179 PIADVMLEAENLFKAGVKELLVISQDTSAYGVDVKFRTGFWNGKPLKTHMTQLVGALGEL 238
              DV+ E   L   GVKE+ ++ Q+ +AY            G+     +      +  +
Sbjct: 177 RFDDVLTEVAGLEAQGVKEITLLGQNVNAY-----------RGEMADGEIADFALLIEYI 225

Query: 239 AQQYGAWVRLHYVYPYPH--VDQIIPLMAEG-KILPYLDVPLQHAHPDVLKRMKRPANGE 295
           A+  G   R+ YV  +P     ++I   A+  K++ +L +P QH    +L  MKR     
Sbjct: 226 AEMEGIE-RIRYVTSHPKEFTQRLIDTYAKVPKLVDHLYLPAQHGSDRILAAMKRGYTSL 284

Query: 296 KNIERIQAWRAMCPDLTIRSTFIAGFPGETEAEFEYLLDFLKEAEIDRLGCFAYSPVEGA 355
           +    ++  RA+ P+++I S FI GFPGET+ +FE ++  + +   D    F +SP  G 
Sbjct: 285 EYKSILRRLRAVRPNISISSDFIVGFPGETDEDFEAMMKLIDDIGYDNSFSFIFSPRPGT 344

Query: 356 TANEIANPVPEEVREERRGRVMQLQEEISKKRLQAKVGKTLRVLIDEVDRNGGTGRTYSD 415
            A  +A+  P EV+ +R  R+  + ++ +++     VG   R+L++        G +  D
Sbjct: 345 PAANLADDTPHEVKLKRLQRLQAVIDQNTRRYSDEMVGSVQRILVE--------GPSKKD 396

Query: 416 APEIDG-------VVYVKPPFEPHRKLEVGQFVDVRISAADAHDLWG 455
           A E+ G       V +   P   H    +GQ V+V I+ + A+ L G
Sbjct: 397 ADELQGRTENNRVVNFSAGPNAAHL---IGQMVNVNITQSHAYTLRG 440


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 894,831
Number of extensions: 37550
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 373
Effective length of database: 720,272
Effective search space: 268661456
Effective search space used: 268661456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)