BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2966.p
         (144 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095119|ref|YP_001100194.1| hypothetical protein HEAR1920 [...   103   3e-24

>gi|134095119|ref|YP_001100194.1| hypothetical protein HEAR1920
           [Herminiimonas arsenicoxydans]
          Length = 166

 Score =  103 bits (258), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 47  LMTHTLVLRGQIDGRDIQLSLAPKKN-EDGLEGRYFFFGGSPEILVAGEVDGDDLIMEES 105
           L    + LRG +   D+Q+ + PK   ++G+EG YF FG S +IL+AGE++G+ L MEES
Sbjct: 47  LFLKPVTLRGTLGDTDVQVHIRPKAEIDEGIEGEYFIFGNSAKILLAGEIEGEILFMEES 106

Query: 106 INGKDVSGQWEGHRQGQSIVGTWSSADGAISKPFALQL 143
            NG ++SGQW+G  +G  + GTW SADG+ +KPFAL++
Sbjct: 107 ENGTNISGQWDGKLEGDMLSGTWMSADGSFTKPFALKV 144


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 231,938
Number of extensions: 8708
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 71
Effective length of database: 759,812
Effective search space: 53946652
Effective search space used: 53946652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)