BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2965.p (401 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095118|ref|YP_001100193.1| cystathionine beta-lyase [Hermi... 612 e-177 gi|134094458|ref|YP_001099533.1| hypothetical protein HEAR1230 [... 103 1e-23 gi|134094996|ref|YP_001100071.1| putative O-acetylhomoserine (Th... 97 1e-21 >gi|134095118|ref|YP_001100193.1| cystathionine beta-lyase [Herminiimonas arsenicoxydans] Length = 388 Score = 612 bits (1579), Expect = e-177, Method: Compositional matrix adjust. Identities = 282/381 (74%), Positives = 330/381 (86%) Query: 21 QTALIHSSYRAPEGFEAFPVGIHHASTVLFPNVAAMRSRDWREKLGYTYGLHGTPTSFVL 80 QTALIH Y APEGF AFP IHHASTVLF +VA+MRSR+W++K YTYGLHGTPT+F L Sbjct: 8 QTALIHHDYVAPEGFAAFPQAIHHASTVLFKDVASMRSRNWQDKTAYTYGLHGTPTTFTL 67 Query: 81 EARLAEIEGGSHCRVTPSGLAAIAMVNFAFLKSGDDVLLPDNVYGPSKDLGQWLERDFQI 140 EARLA IE G HC + PSGL+AIAMV+FAFLKSGDDVL+PDNVY P+++L WL DF I Sbjct: 68 EARLAAIENGKHCLLAPSGLSAIAMVDFAFLKSGDDVLIPDNVYNPNRELANWLAHDFGI 127 Query: 141 TARFYDPMIGAGLAELIQPNTRLIWTEAPGSVSMEVPDIPALCRAAHARGVLVAIDNTWA 200 AR+YDP+IG+G+A+LIQPNTRLIWTEAPGSVSMEVPDIPA+C+AAHA+ VLVA+DNTW+ Sbjct: 128 AARYYDPLIGSGIADLIQPNTRLIWTEAPGSVSMEVPDIPAICKAAHAKSVLVALDNTWS 187 Query: 201 AGLAFKAFDHGVDIVMQAVTKYQSGGSDVLMGAVIVRDQALNEKLELAHMRLGFGVGMDD 260 AG+A +AFD GVDIVMQA+TKYQSGGSDVLMGAVI +DQALN +LELAHMRLGFGV DD Sbjct: 188 AGIALRAFDLGVDIVMQALTKYQSGGSDVLMGAVITQDQALNHRLELAHMRLGFGVSADD 247 Query: 261 VYLVLRSLSSMRLRFQAHDAAARKVAAWLKQRPEIVAVLHPAFEDCPGHENWKRDFTGAG 320 YLVLRSL +M+LRF+AHDAAARK+AAWL+ +P+I VLHPA +CPGHE W+RDF+GAG Sbjct: 248 SYLVLRSLPTMKLRFEAHDAAARKIAAWLQTQPQIATVLHPALPECPGHEIWQRDFSGAG 307 Query: 321 GLFSVIFDPRYGEQQTDRFVDSLRLFKIGYSWGGAHSLCVPYRMRGMRRQWQREGQLVRF 380 GLFS++FD RY E QTDRFVDSL+LFKIG+SWGGA+SLCVPYRM+ MRR W +GQL+R Sbjct: 308 GLFSILFDARYTEAQTDRFVDSLKLFKIGFSWGGANSLCVPYRMQHMRRNWPHQGQLLRL 367 Query: 381 NIGLESPEDLIADIEQALAQL 401 NIGLE P+DLI D+ QA L Sbjct: 368 NIGLEDPDDLIGDLRQAFDAL 388 >gi|134094458|ref|YP_001099533.1| hypothetical protein HEAR1230 [Herminiimonas arsenicoxydans] Length = 414 Score = 103 bits (257), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 102/411 (24%), Positives = 171/411 (41%), Gaps = 47/411 (11%) Query: 19 DPQTALIHSSYRAPEGFEAFPVGIHHASTVLFPNVAAMRSRDWREKLGYTYGLHGTPTSF 78 D Q A+ H S P IH + T + + + + ++ GY YG G PT Sbjct: 17 DRQKAIEHGSLHKP---------IHTSVTFGYNDARELATVFQGKQPGYRYGRQGNPTVA 67 Query: 79 VLEARLAEIEGGSHCRVTPSGLAAIAMVNFAFLKSGDDVLLPDNVYGPSKDLGQWLERDF 138 LE ++ ++E G +G+AAI + A L+ GD V+ ++G + L W Sbjct: 68 ALEDKVNKMEDGFATICFATGMAAIGAIAQALLQKGDHVVSSAFLFGNTNSL--WQTVGL 125 Query: 139 Q-ITARFYDPMIGAGLAELIQPNTRLIWTEAPGSVSMEVPDIPALCRAAHARGVLVAIDN 197 Q + D + I P TR+++ E + +V D+ + + RG++ +DN Sbjct: 126 QGVAVSMVDATDVKHVEAAITPATRIVFVETIANPRTQVADLARIGKLCAERGIVYIVDN 185 Query: 198 TWAAGLAFKAFDHGVDIVMQAVTKYQSGGSDVLMGAVIVRDQALNE-------------- 243 T + F+ G IV+ A+TK G + L G++ D L + Sbjct: 186 TMTSPYLFQPKSVGASIVINALTKSIGGHGNALGGSLT--DTGLYDWSRFPNIFDTYKRY 243 Query: 244 ---KLELAHMR------LGFGVGMDDVYLVLRSLSSMRLRFQAHDAAARKVAAWLKQRPE 294 + +A +R G +G + + + +M LR A A VA L+ Sbjct: 244 PTVQWGIAQIRAKSLRDFGASLGPEAAHHLAVGSETMALRLDRECANALAVAQMLEADER 303 Query: 295 IVAVLHPAFEDCPGHENWKRDFTGAGGLFSVIFDPRYGEQQTDRFVDSLRLFKIGYSWGG 354 + AV +P + P H F G LFS F+ + G D +++ L+L + G Sbjct: 304 VAAVYYPGLKSHPQHAISTELFRSYGSLFS--FELKEGIDCFD-YLNRLKLGISASNLGD 360 Query: 355 AHSLCVP------YRMRGMRRQWQREGQ-LVRFNIGLESPEDLIADIEQAL 398 +L +P Y M RR + L+R +IG+E +DL+ D +AL Sbjct: 361 TRTLVIPVAHTIFYEMGAERRASMGIAESLIRVSIGIEDTDDLVEDFRKAL 411 >gi|134094996|ref|YP_001100071.1| putative O-acetylhomoserine (Thiol)-lyase [Herminiimonas arsenicoxydans] Length = 427 Score = 97.1 bits (240), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 103/419 (24%), Positives = 178/419 (42%), Gaps = 53/419 (12%) Query: 21 QTALIHSSYRAPEGFEAFPVGIHHASTVLFPNVAAMRSRDWRE-KL-GYTYGLHGTPTSF 78 +T +H+ Y + +A V I+ TV + +A D + K+ G Y PT+ Sbjct: 4 ETIALHAGYASDPTTKAAAVPIYQ--TVAYTFDSAQHGADLFDLKVPGNIYTRIMNPTNA 61 Query: 79 VLEARLAEIEGGSHCRVTPSGLAAIAMVNFAFLKSGDDVLLPDNVYGPSKDLGQWLERDF 138 VLE R+A +EGG SG+AAI + GD+++ +YG + +L Sbjct: 62 VLEQRVAALEGGIGALALASGMAAITAAIQTICEVGDNIVSAGTIYGGTYNLFAHTIPQQ 121 Query: 139 QITARFYDPMIGAGLAELIQPNTRLIWTEAPGSVSMEVPDIPALCRAAHARGVLVAIDNT 198 I RF + A I T+ I+ E+ G+ V DI L AHA G+ + +DNT Sbjct: 122 GIEVRFANSSEPDTFAAHIDERTKAIFCESIGNPLGNVTDIARLADIAHAHGIPLIVDNT 181 Query: 199 WAAGLAFKAFDHGVDIVMQAVTKYQSGGSDVLMGAVI-----------VRDQALNE---- 243 + + +HG DIV+ A+TKY G + + G ++ R + LNE Sbjct: 182 VPSPYLCRPIEHGADIVVHALTKYMGGHGNSIGGIIVDSGKFPWAEHKARFKRLNEPDVS 241 Query: 244 -----------------KLELAHMR-LGFGVGMDDVYLVLRSLSSMRLRFQAHDAAARKV 285 + + +R +G + + +L+L+ + ++ LR + A + + Sbjct: 242 YHGVVYTEALGAAAYIGRARVVPLRNMGAALAPMNAFLILQGIDTLALRMERICANTQAL 301 Query: 286 AAWLKQRPEIVAVLHPAFEDCPGHENWKRDFTGAG------GLFSVIFDPRYGEQQTDRF 339 A +L+ ++ V + D P H ++ G G+ S DPR +T Sbjct: 302 AKYLQTHKKVAWVKYAGLPDHPDHALAQKYMDGKASGILSFGVKSNDTDPRAAGART--- 358 Query: 340 VDSLRLFKIGYSWGGAHSLCVPYRMRGMRRQWQRE-------GQLVRFNIGLESPEDLI 391 +D+L+LF + G SL R+ + E ++R ++G+E +DLI Sbjct: 359 LDALQLFMRLVNIGDTKSLATHPASTTHRQLDEVELAKAGVSEDMIRLSVGIEHIDDLI 417 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.138 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 806,923 Number of extensions: 34434 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 3 Length of query: 401 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 317 Effective length of database: 723,567 Effective search space: 229370739 Effective search space used: 229370739 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)